Gene omics information

Query gene ID Zm.5479.1.A1_at
Gene name
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9199.0Zm.5479.1.A1_atAY109635.1--3e-1At1g71230CSN5B (COP9-SIGNALOSOME 5B)S.X.H.G.
0.7792.1Zm.16449.1.A1_atAY112082.1--1e+0At3g29034unknown proteinS.X.H.G.
0.6785.8Zm.6498.1.A1_atAI691894--3e-4At1g10050glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing proteinS.X.H.G.
0.5065.7Zm.6721.6.A1_atCK371147Histone H4-5e-28At5g59690histone H4S.X.H.G.
0.4048.5Zm.2376.6.S1_x_atCF020992cortical cell-delineating protein-7e-3At5g63740zinc finger protein-relatedS.X.H.G.
0.147.7Zm.3623.1.S1_atBG873827hypothetical protein LOC100216808-7e+0At5g52440HCF106S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
13.498.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.998.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.998.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.698.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.697.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.397.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.397.4GSM202298B73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.896.6GSM202304B73 immature ear tissue, biological replicate 3GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.696.4GSM205366B73 13 DAP endosperm tissue biological replicate 1GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.596.3GSM205374B73 13 DAP endosperm tissue biological replicate 3GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.8601053Zm.5479.1.S1_atAY109635.1--3e-1At1g71230CSN5B (COP9-SIGNALOSOME 5B)C.G.S.X.
0.069e-340Zm.3513.1.A1_atCA404391--6e-5At1g07705transcription regulatorC.G.S.X.
0.035e-134Zm.9788.1.A1_atBM338945--1e-1At1g17545protein phosphatase 2C-related / PP2C-relatedC.G.S.X.
0.022e+032Zm.4069.1.A1_atCO532116hypothetical protein LOC100274464-4e-5At5g16840BPA1 (BINDINGPARTNEROFACD11 1)C.G.S.X.
0.022e+032Zm.17546.1.A1_atCK347220--2e+0At4g16350CBL6 (CALCINEURIN B-LIKE PROTEIN 6)C.G.S.X.
0.012e+032Zm.16361.1.S1_atCF273307hypothetical protein LOC100279313-1e+0At1g48410AGO1 (ARGONAUTE 1)C.G.S.X.
0.028e+030Zm.850.1.A1_s_atAI666119hypothetical protein LOC100276369-5e+0At3g52470harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinC.G.S.X.
0.018e+030Zm.5443.1.A1_atCF602596hypothetical protein LOC100191611-1e-3At4g27000ATRBP45CC.G.S.X.
0.018e+030Zm.4991.1.A1_atCO526086hypothetical protein LOC100273531-6e-14At5g49990xanthine/uracil permease family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.033e-136Arabidopsis thalianaAt1g71230843463CSN5B (COP9-SIGNALOSOME 5B)Encodes a subunit of the COP9 complex, similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Involved in protein deneddylation. Double mutants with CSN5A are constitutively photomorphogenic (de-etiolated) and have abnormal auxin responses.---C.G.S.X.
0.047e+032Glycine maxHgAffx.22231.1.S1_atBI396849--5e+0At4g18080unknown proteinC.G.S.X.
0.144e-1477Hordeum vulgareContig13533_atContig13533--1e+0At5g48220indole-3-glycerol phosphate synthase, putativeC.G.S.X.
0.036e-446Oryza sativaOs02g0782200AK070439.1-NOT2/NOT3/NOT5 family protein6e-9At1g07705transcription regulatorC.G.S.X.
0.034e-136Populus trichocarpaPtpAffx.42317.1.A1_atBP935794hypothetical protein-1e-12At1g14810semialdehyde dehydrogenase family proteinC.G.S.X.
0.391e-83309Triticum aestivumTa.26734.1.A1_atCD490986--1e+0At1g07705transcription regulatorC.G.S.X.
0.036e+030Vitis vinifera1621358_atCD008565--2e-2At5g52330meprin and TRAF homology domain-containing protein / MATH domain-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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