CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.5474.1.S1_at

Gene name hypothetical protein LOC100194401

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 65.7 Zm.5474.1.S1_at CO531804 hypothetical protein LOC100194401 - 2e-3 At4g11450 unknown protein S.X. H.G.
0.83 95.6 Zm.13114.1.A1_at CA404567 chloroplast outer envelope protein 86 - 4e-3 At5g57720 transcriptional factor B3 family protein S.X. H.G.
0.80 94.0 Zm.7407.1.A1_x_at BM074289 - - 3e-7 At4g37760 SQE3 (squalene epoxidase 3) S.X. H.G.
0.57 75.1 Zm.4380.1.A1_at AY105814.1 Hypothetical protein LOC100193145 - 5e-10 At2g29200 APUM1 (Arabidopsis Pumilio 1) S.X. H.G.
0.55 71.6 Zm.1119.1.A1_at BE510368 - - 1e-2 At1g78922 unknown protein S.X. H.G.
0.53 69.1 Zm.1996.1.S1_at CK347826 hypothetical protein LOC100276029 - 6e-4 At1g47420 - S.X. H.G.
0.36 41.3 Zm.14057.2.S1_x_at AF457961.1 - - 8e-20 At4g22910 FZR2 (FIZZY-RELATED 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.9 97.3 GSM206305 Right pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.6 97.1 GSM202290 Mo17 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.7 96.5 GSM206306 Lower pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.6 96.4 GSM206299 Left pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.1 95.9 GSM205420 Mo17 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.9 95.7 GSM206307 Lower pulvinus 5 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.6 95.2 GSM290555 CCR mutant M1 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.5 95.1 GSM375796 Deep-sowing 10d treatment GA3, biological rep2 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
3.5 95.1 GSM206310 Lower pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.5 95.1 GSM205424 Mo17 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 9e-1 34 Zm.398.1.S1_at AF384032.1 histone deacetylase HDA101 /// RPD3 histone deacetylase homolog - 1e-30 At4g38130 HD1 (HISTONE DEACETYLASE 1) C.G. S.X.
0.02 4e+0 32 ZmAffx.883.1.A1_at AI770811 - - 3e+0 At3g15080 exonuclease family protein C.G. S.X.
0.02 4e+0 32 ZmAffx.883.1.S1_at AI770811 hypothetical protein LOC100274350 - 3e+0 At3g15080 exonuclease family protein C.G. S.X.
0.02 4e+0 32 Zm.8138.1.A1_at BM336608 tubby protein - 1e-3 At1g25280 AtTLP10 (TUBBY LIKE PROTEIN 10) C.G. S.X.
0.01 4e+0 32 Zm.700.1.A1_at CA403882 heat shock 70 kDa protein - 2e-54 At5g09590 MTHSC70-2 (MITOCHONDRIAL HSP70 2) C.G. S.X.
0.01 4e+0 32 Zm.6768.1.S1_at AI396277 anther-specific proline-rich protein APG - 2e-4 At1g29670 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.01 4e+0 32 Zm.4051.1.A1_at CB350632 protein SUR2 - 1e-27 At1g69640 SBH1 (SPHINGOID BASE HYDROXYLASE 1) C.G. S.X.
0.01 4e+0 32 Zm.3547.1.A1_at BM350338 aspartyl-tRNA synthetase - 7e-5 At4g31180 aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative C.G. S.X.
0.02 4e+0 32 Zm.18446.1.A1_at CO518758 - - 3e-2 At1g29800 phosphoinositide binding / zinc ion binding C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-3 44 Arabidopsis thaliana At4g11450 826749 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;PMO - - - C.G. S.X.
0.02 3e+0 34 Glycine max Gma.7149.1.A1_at BU545087 - - 5e+0 At5g52680 heavy-metal-associated domain-containing protein C.G. S.X.
0.18 2e-17 89 Hordeum vulgare Contig13637_at Contig13637 - - 5e+0 At4g03180 unknown protein C.G. S.X.
0.18 2e-26 121 Oryza sativa Os03g0267600 AK072790.1 - Tubby family protein 2e+0 At5g01280 - C.G. S.X.
0.03 2e-1 38 Populus trichocarpa PtpAffx.128558.1.S1_at AJ771692 sulfate/bicarbonate/oxalate exchanger and transporter sat-1 /// sulfate/bicarbonate/oxalate exchanger and transporter sat-1 - 2e-20 At5g13550 SULTR4 C.G. S.X.
0.21 2e-28 127 Triticum aestivum TaAffx.112933.1.S1_at CA619664 - - 4e+0 At4g35170 - C.G. S.X.
0.02 1e+1 30 Vitis vinifera 1621841_at BQ796797 hypothetical protein LOC100258708 - 9e-3 Atcg01000 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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