CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.5471.1.A1_at

Gene name hypothetical protein LOC100273539

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.6 Zm.5471.1.A1_at BG841029 hypothetical protein LOC100273539 - 3e-38 At3g13670 protein kinase family protein S.X. H.G.
0.83 95.6 Zm.15732.1.A1_a_at AY104940.1 hypothetical protein LOC100280046 - 6e-9 At3g06980 DEAD/DEAH box helicase, putative S.X. H.G.
0.73 89.9 Zm.19097.1.A1_at CO519732 hypothetical protein LOC100216571 - 1e+0 At5g55240 caleosin-related family protein / embryo-specific protein, putative S.X. H.G.
0.73 89.9 Zm.4568.1.A1_at AI734826 hypothetical protein LOC100191866 - 6e-2 At5g47220 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) S.X. H.G.
0.44 55.7 Zm.5670.1.A1_at CF635274 delta-7-sterol-C5 - 8e-13 At3g02580 STE1 (STEROL 1) S.X. H.G.
0.40 48.5 Zm.10413.1.A1_at BM336637 - - 1e+0 At3g50800 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.2 94.5 GSM206305 Right pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.2 94.5 GSM206325 Upper pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.0 94.0 GSM202322 B73x Mo17 19 day after pollination embryo tissue, biological replicate 3 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.0 94.0 GSM202290 Mo17 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.9 93.8 GSM206326 Upper pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.9 93.8 GSM206306 Lower pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.9 93.8 GSM206307 Lower pulvinus 5 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.8 93.5 GSM202295 Mo17xB73 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.7 93.2 GSM202318 B73xMo17 19 day after pollination embryo tissue, biological replicate 2 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.7 93.2 GSM202303 Mo17 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 2e-25 117 Zm.14701.1.A1_at CB334376 - - 1e-25 At3g03940 protein kinase family protein C.G. S.X.
0.17 7e-19 95 Zm.6736.1.S1_at AY108079.1 ATP binding protein - 1e-37 At3g03940 protein kinase family protein C.G. S.X.
0.12 4e-8 59 Zm.6736.2.A1_at AY106527.1 ATP binding protein - 2e-35 At3g03940 protein kinase family protein C.G. S.X.
0.02 1e-1 38 Zm.13119.1.A1_at AY104133.1 - - 7e-45 At4g28880 ckl3 (Casein Kinase I-like 3) C.G. S.X.
0.02 1e-1 38 Zm.13119.1.S1_at AY104133.1 casein kinase I isoform delta-like - 7e-45 At4g28880 ckl3 (Casein Kinase I-like 3) C.G. S.X.
0.01 1e-1 38 Zm.12384.1.A1_at AY111304.1 - - 5e-4 At3g23340 ckl10 (Casein Kinase I-like 10) C.G. S.X.
0.01 1e-1 38 Zm.12384.1.S1_at CK370080 - - 5e-4 At3g23340 ckl10 (Casein Kinase I-like 10) C.G. S.X.
0.01 2e+0 34 ZmAffx.1070.1.A1_at AI943763 - - 7e-1 At5g03090 unknown protein C.G. S.X.
0.01 2e+0 34 ZmAffx.1070.1.S1_at AI943763 - - 7e-1 At5g03090 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 3e-38 161 Arabidopsis thaliana At3g13670 820572 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVA - - - C.G. S.X.
0.23 6e-22 107 Glycine max Gma.1066.1.S1_at BG363651 - - 4e-67 At3g13670 protein kinase family protein C.G. S.X.
0.27 3e-80 299 Hordeum vulgare Contig6056_s_at Contig6056 - - 7e-19 At3g13670 protein kinase family protein C.G. S.X.
0.23 8e-19 97 Oryza sativa Os01g0744300 NM_191171.1 - Casein kinase-like protein 4e-15 At2g25760 protein kinase family protein C.G. S.X.
0.20 2e-25 119 Populus trichocarpa PtpAffx.203642.1.S1_at pmrna7226 hypothetical protein - 4e-102 At3g13670 protein kinase family protein C.G. S.X.
0.20 1e-13 79 Triticum aestivum Ta.7089.1.S1_at CD872336 casein kinase-like protein - 2e-13 At3g13670 protein kinase family protein C.G. S.X.
0.14 2e-33 143 Vitis vinifera 1610777_at CD797701 hypothetical protein LOC100263956 - 2e-42 At3g13670 protein kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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