Gene omics information

Query gene ID	Zm.5451.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.5451.1.S1_at	AI621979	-	-	8e-4	At4g36970	remorin family protein	S.X.	H.G.	Please select
0.83	95.6	Zm.5413.1.A1_at	AY112255.1	hypothetical protein LOC100274255	-	5e+0	At2g19340	membrane protein, putative	S.X.	H.G.	Please select
0.77	92.1	Zm.13494.1.A1_at	AY108782.1	-	-	4e-1	At2g17300	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.8100.2.S1_at	CD447160	postsynaptic protein CRIPT	-	3e-13	At1g61780	postsynaptic protein-related	S.X.	H.G.	Please select
0.63	81.1	Zm.13751.1.S1_at	AY105922.1	-	-	9e+0	At3g01700	AGP11	S.X.	H.G.	Please select
0.61	79.5	Zm.19299.1.A1_at	BM074654	-	-	4e-3	At4g09270	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.6	98.8	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.0	98.4	GSM206309	Lower pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.8	98.3	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.5	98.3	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.1	98.2	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.2	98.0	GSM206298	Lower pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.1	98.0	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.3	97.4	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.3	97.4	GSM206306	Lower pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.3	97.4	GSM206292	Upper pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	2e-17	89	Zm.14571.1.S1_at	CD976279	hypothetical protein LOC100280272	-	4e+0	At5g51910	TCP family transcription factor, putative	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.9391.1.A2_at	CO523934	hypothetical protein LOC100279653	-	2e-105	At1g09770	ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.9391.1.A1_at	AF458962.1	CDC5 protein	-	2e-105	At1g09770	ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.16123.1.S1_at	CF075404	-	-	1e-2	At2g37570	SLT1 (sodium- and lithium-tolerant 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.15824.1.S1_at	CF348924	ras-like gene	-	3e-74	At4g17170	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.5021.1.S1_at	AI600438	hypothetical protein LOC100276431	-	4e-9	At5g57410	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	32	Zm.17747.1.S1_at	CK370981	hypothetical protein LOC100193554	-	1e+0	At2g29390	SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2)	C.G.	S.X.	Please select
0.02	5e+0	32	Zm.16692.1.A1_at	CF752089	-	-	4e+0	At4g04925	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.15298.1.A1_at	BQ538208	-	-	1e+0	At5g63740	zinc finger protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-4	46	Arabidopsis thaliana	At4g36970	829851	remorin family protein	F:DNA binding;P:unknown;C:plasma membrane, chloroplast;POMFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	GmaAffx.29956.1.S1_at	AW101262	-	-	8e-1	At5g44430	PDF1.2c (plant defensin 1.2c)	C.G.	S.X.	Please select
0.13	6e-9	61	Hordeum vulgare	Contig23067_at	Contig23067	-	-	7e-2	At2g46225	ABIL1 (Abi-1-like 1)	C.G.	S.X.	Please select
0.46	2e-117	424	Oryza sativa	Os02g0767000	AK122109.1	-	Remorin, C-terminal region domain containingprotein	1e-9	At4g36970	remorin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-4	48	Populus trichocarpa	PtpAffx.205353.1.S1_at	pmrna10598	hypothetical protein	-	3e-15	At4g36970	remorin family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	1e-36	155	Triticum aestivum	Ta.7399.1.A1_at	BJ319349	-	-	1e-7	At4g36970	remorin family protein	C.G.	S.X.	Please select
0.06	1e-2	40	Vitis vinifera	1614022_at	CF212029	hypothetical protein LOC100252502	-	6e-9	At4g36970	remorin family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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