Gene omics information

Query gene ID	Zm.5441.1.S1_at
Gene name	hypothetical protein LOC100274317
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.5441.1.S1_at	CO528962	hypothetical protein LOC100274317	-	3e+0	At3g23130	SUP (SUPERMAN)	S.X.	H.G.	Please select
0.91	99.0	Zm.5220.1.S1_at	AI614989	hypothetical protein LOC100279470	-	1e+0	At5g36120	CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)	S.X.	H.G.	Please select
0.83	95.6	Zm.18590.1.A1_at	AW562614	exostosin-like	-	1e+0	At5g22930	unknown protein	S.X.	H.G.	Please select
0.77	92.1	ZmAffx.1097.1.S1_at	AW120085	-	-	1e+1	At5g25770	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.16482.2.A1_at	BM337760	-	-	9e-19	At3g09630	60S ribosomal protein L4/L1 (RPL4A)	S.X.	H.G.	Please select
0.55	71.6	Zm.1546.3.A1_x_at	CK369824	-	-	1e-6	At1g15270	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.6	96.4	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.9	95.7	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.8	95.5	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
3.7	95.4	GSM375794	Deep-sowing 10d treatment UCZ, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
3.5	95.1	GSM385707	Deep-sowing 10d treatment IAA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
3.4	94.9	GSM323172	Zm_SG200Dpep1_24hpi_III	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
3.3	94.7	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
3.2	94.5	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
3.2	94.5	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
3.1	94.3	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.62	0	912	Zm.5826.1.A1_at	CA402658	-	-	9e-1	At2g43820	UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2)	C.G.	S.X.	Please select
0.05	1e-7	57	Zm.1889.1.A1_at	CO520833	cytokinin-N-glucosyltransferase 1	-	1e-3	At3g55700	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please select
0.03	4e-7	56	Zm.59.1.S1_at	L34847.1	IAA-glu synthetase	-	2e-1	At4g15280	UGT71B5 (UDP-GLUCOSYL TRANSFERASE 71B5)	C.G.	S.X.	Please select
0.03	2e-6	54	Zm.18507.1.A1_at	CO533969	hypothetical protein LOC100194073	-	2e-5	At5g59580	UGT76E1 (UDP-GLUCOSYL TRANSFERASE 76E1)	C.G.	S.X.	Please select
0.06	3e-5	50	Zm.3216.1.S1_at	AJ006537	limonoid UDP-glucosyltransferase	-	1e-1	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	C.G.	S.X.	Please select
0.04	3e-5	50	Zm.13390.1.A1_at	AF457982.1	-	-	4e+0	At3g01328	-	C.G.	S.X.	Please select
0.04	3e-5	50	Zm.13390.1.S1_at	AF457982.1	-	-	4e+0	At3g01328	-	C.G.	S.X.	Please select
0.02	9e-2	38	Zm.17720.1.A1_at	BM340967	-	-	9e-1	At4g12340	-	C.G.	S.X.	Please select
0.04	9e-2	38	Zm.13164.1.A1_at	CD437268	-	-	8e-1	At1g22380	AtUGT85A3 (UDP-glucosyl transferase 85A3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e+0	34	Arabidopsis thaliana	At3g23130	821888	SUP (SUPERMAN)	Flower-specific gene controlling the boundary of the stamen and carpel whorls. Similar to zinc finger transcription factors.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	PsAffx.psZO006iE07r_at	PsAffx.psZO006iE07r	-	-	4e+0	At5g26870	AGL26	C.G.	S.X.	Please select
0.06	7e-6	52	Hordeum vulgare	Contig21253_at	Contig21253	-	-	2e+1	At5g17165	unknown protein	C.G.	S.X.	Please select
0.08	5e-7	57	Oryza sativa	Os07g0240700	CB659047	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	3e-3	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	36	Populus trichocarpa	Ptp.1108.1.A1_a_at	CV280255	hypothetical protein	-	1e-13	At1g25440	zinc finger (B-box type) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	4e-46	186	Triticum aestivum	Ta.1688.1.S1_at	CA630327	-	-	4e+0	At5g18140	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.01	1e+0	34	Vitis vinifera	1612914_at	CB343257	hypothetical protein LOC100260580	-	4e-19	At4g34660	SH3 domain-containing protein 2 (SH3P2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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