CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.5393.1.S1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.38 44.2 Zm.5393.1.S1_at CF056132 - - 2e-26 At1g80400 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.73 89.9 Zm.2662.1.A1_at AW066760 - - 8e-11 At4g26900 AT-HF (HIS HF) S.X. H.G.
0.33 36.0 Zm.19189.1.A1_at CO528754 hypothetical protein LOC100279787 - 2e+0 At1g01830 armadillo/beta-catenin repeat family protein S.X. H.G.
0.32 33.4 Zm.3141.1.A1_at AY111001.1 dirigent - 5e-1 At1g15950 CCR1 (CINNAMOYL COA REDUCTASE 1) S.X. H.G.
0.29 28.1 Zm.4474.2.A1_at AY108450.1 - - 3e+0 At5g46720 - S.X. H.G.
0.15 8.6 Zm.19158.2.S1_a_at BM073998 hypothetical protein LOC100273021 /// thioredoxin F-type - 3e-11 At5g16400 ATF2 S.X. H.G.
0.14 7.7 Zm.19103.1.S1_at CF625279 hypothetical protein LOC100193224 - 3e+0 At4g09490 RNase H domain-containing protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.3 96.1 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis
3.6 95.2 GSM253281 ZM_8d_SG200_3Alu_II GSE10023 Maize gene expression during infection with Ustilago maydis
3.6 95.2 GSM206325 Upper pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.4 94.9 GSM253282 ZM_8d_SG200_3Alu_III GSE10023 Maize gene expression during infection with Ustilago maydis
3.3 94.7 GSM205434 Mo17xB73 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.1 94.3 GSM206299 Left pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.1 94.3 GSM205424 Mo17 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.1 94.3 GSM206332 Lower pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.0 94.0 GSM206305 Right pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.9 93.8 GSM206300 Upper pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 3e-14 79 Zm.16836.1.A1_at CF629974 hypothetical protein LOC100193667 - 7e-2 At1g80400 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 5e-1 36 Zm.705.1.S1_at BG842406 - - 4e-2 At1g04445 zinc finger (C2H2 type) family protein C.G. S.X.
0.02 5e-1 36 Zm.18743.1.A1_at CK985678 palmitoyltransferase ZDHHC9 - 6e-17 At5g50020 zinc finger (DHHC type) family protein C.G. S.X.
0.01 5e-1 36 Zm.18449.1.A1_at CO528518 - - 5e+0 At4g03210 XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9) C.G. S.X.
0.01 2e+0 34 Zm.9855.1.S1_at CO533201 hypothetical protein LOC100280018 - 1e-18 At2g31190 - C.G. S.X.
0.01 2e+0 34 Zm.18124.1.S1_at AY104334.1 hypothetical protein LOC100275630 - 1e+0 At1g32560 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein C.G. S.X.
0.01 2e+0 34 Zm.15485.1.S1_at CD446373 - - 8e-1 At5g22000 RHF2A (RING-H2 GROUP F2A) C.G. S.X.
0.01 2e+0 34 Zm.13258.1.A1_at AY109432.1 CENPCB protein - 2e-1 At5g20160 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein C.G. S.X.
0.01 2e+0 34 Zm.13258.1.S1_at AY109432.1 CENPCB protein - 2e-1 At5g20160 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 2e-26 121 Arabidopsis thaliana At1g80400 844380 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB - - - C.G. S.X.
0.04 2e+0 36 Glycine max Gma.16766.1.S1_at CD417767 - - 1e+0 At4g18110 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.47 0 678 Hordeum vulgare Contig9134_at Contig9134 - - 4e-22 At4g32600 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.45 9e-151 535 Oryza sativa Os02g0787500 AY224451.1 - The start codon is not identified. 7e-39 At4g32600 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.12 4e-4 48 Populus trichocarpa PtpAffx.22660.1.A1_at DN497179 hypothetical protein - 3e-46 At4g32600 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.55 0 678 Triticum aestivum Ta.9487.1.S1_at CD935778 - - 2e-10 At4g32600 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 2e-5 50 Vitis vinifera 1620739_s_at BQ800573 hypothetical protein LOC100245718 - 2e-8 At4g32600 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage