Gene omics information

Query gene ID	Zm.5377.1.A1_at
Gene name	PCO142509 protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	Zm.5377.1.A1_at	AY107303.1	PCO142509 protein	-	5e-1	At1g30757	unknown protein	S.X.	H.G.	Please select
0.77	92.1	Zm.15936.2.S1_at	CF040236	Acidic ribosomal protein P1a	-	7e-2	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	S.X.	H.G.	Please select
0.73	89.9	Zm.854.1.A1_at	AW066950	vesicle-associated membrane protein-associated protein A	-	1e-2	At4g00170	vesicle-associated membrane family protein / VAMP family protein	S.X.	H.G.	Please select
0.47	59.9	Zm.1284.1.S1_at	BE344880	-	-	1e+1	At5g50760	auxin-responsive family protein	S.X.	H.G.	Please select
0.46	58.4	Zm.5767.1.A1_at	AI714844	hypothetical protein LOC100273619	-	8e-2	At3g53850	-	S.X.	H.G.	Please select
0.36	41.3	Zm.17115.1.S1_at	CN844978	-	-	1e+0	At5g67490	unknown protein	S.X.	H.G.	Please select
0.17	10.6	Zm.15967.1.S1_s_at	CA404149	-	-	2e-4	At5g26830	threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.0	98.7	GSM290556	CCR mutant M2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
10.3	98.4	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
9.2	98.2	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
9.2	98.2	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
8.3	98.0	GSM202281	Mo17 11-day seedling aerial tissue biological replicate 2	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
7.9	97.9	GSM258184	Mo17 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
7.9	97.9	GSM258193	Mo17 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
7.5	97.8	GSM202285	Mo17 11-day seedling aerial tissue biological replicate 3	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
7.5	97.8	GSM258175	Mo17 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
7.3	97.8	GSM202406	Zmet2 study 11-day seedling aerial tissue genotype Mo17 Rep2	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	1e-24	113	Zm.534.2.S1_at	AI692057	FLP1	-	2e-4	At5g10625	-	C.G.	S.X.	Please select
0.02	5e-5	48	Zm.9549.1.S1_at	AY106255.1	shaggy-related protein kinase eta	-	3e-65	At4g18710	BIN2 (BRASSINOSTEROID-INSENSITIVE 2)	C.G.	S.X.	Please select
0.01	5e-5	48	Zm.14088.1.A1_at	AY104037.1	aconitate hydratase, cytoplasmic	-	4e-19	At2g05710	aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative	C.G.	S.X.	Please select
0.02	5e-5	48	Zm.13346.1.S1_at	AY103544.1	alpha tubulin4	-	0	At1g50010	TUA2	C.G.	S.X.	Please select
0.01	1e-2	40	Zm.7659.1.S1_at	AY639019.1	phosphate transport protein	-	5e-12	At5g43360	PHT3 (PHOSPHATE TRANSPORTER 3)	C.G.	S.X.	Please select
0.01	5e-2	38	Zm.2987.1.S1_at	BG550493	-	-	3e-34	At4g39660	AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2)	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.3478.1.S1_a_at	AY124703.1	sucrose synthase2	-	4e-47	At5g49190	SUS2 (SUCROSE SYNTHASE 2)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.3188.1.A1_at	BM340302	50S ribosomal protein L40	-	2e-3	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.1666.1.A1_at	AW574495	systemin receptor SR160	-	7e-1	At3g22800	leucine-rich repeat family protein / extensin family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	36	Arabidopsis thaliana	At1g30757	839957	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-4	48	Glycine max	GmaAffx.90667.1.A1_at	CF806392	-	-	1e+1	At5g45350	proline-rich family protein	C.G.	S.X.	Please select
0.38	6e-113	406	Hordeum vulgare	Contig4320_at	Contig4320	-	-	3e+0	At5g53030	unknown protein	C.G.	S.X.	Please select
0.36	8e-103	375	Oryza sativa	Os02g0616100	AK064829.1	-	Leucine-rich repeat, plant specific containingprotein	4e+0	At1g54200	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-1	36	Populus trichocarpa	PtpAffx.80885.1.S1_at	BP922846	hypothetical protein	-	9e-1	At3g63230	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.53	5e-115	414	Triticum aestivum	Ta.17228.1.A1_at	CK209214	-	-	7e+0	At3g56810	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Vitis vinifera	1621075_at	BQ799036	hypothetical protein LOC100255759	-	5e+0	At3g50920	phosphatidic acid phosphatase-related / PAP2-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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