CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.537.2.S1_at

Gene name hypothetical protein LOC100273405

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 77.8 Zm.537.2.S1_at CF054696 hypothetical protein LOC100273405 - 1e-46 At4g02930 elongation factor Tu, putative / EF-Tu, putative S.X. H.G.
0.60 77.8 Zm.4255.1.A1_at AY112172.1 - - 2e+0 At5g23750 remorin family protein S.X. H.G.
0.60 77.8 Zm.12936.1.A1_at AY108987.1 - - 7e-1 At3g21338 unknown protein S.X. H.G.
0.47 59.9 Zm.19240.1.A1_at CF624777 DNA binding protein - 1e+0 At5g54490 PBP1 (PINOID-BINDING PROTEIN 1) S.X. H.G.
0.40 48.5 Zm.12977.2.S1_at AI677017 Hypothetical protein LOC100193319 - 5e-5 At1g15370 - S.X. H.G.
0.20 14.2 Zm.678.1.S1_at AF302187.1 sucrose export defective1 - 4e-15 At4g32770 VTE1 (VITAMIN E DEFICIENT 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.6 97.6 GSM205369 Mo17 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.9 97.3 GSM205371 Mo17xB73 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.2 96.9 GSM205373 Mo17 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.3 96.1 GSM205365 Mo17 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.9 95.7 GSM202297 Mo17 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.7 95.4 GSM202303 Mo17 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.6 95.2 GSM205375 Mo17xB73 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.6 95.2 GSM205370 B73 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.4 94.9 GSM202306 Mo17xB73 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.2 94.5 GSM202307 B73xMo17 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.72 0 1974 Zm.537.1.A1_a_at AI065500 hypothetical protein LOC100194026 /// hypothetical protein LOC100273405 - 1e-55 At4g02930 elongation factor Tu, putative / EF-Tu, putative C.G. S.X.
0.72 0 1974 Zm.537.1.A1_at AI065500 hypothetical protein LOC100194026 - 1e-55 At4g02930 elongation factor Tu, putative / EF-Tu, putative C.G. S.X.
0.14 2e-67 256 Zm.6816.1.A1_at AY104584.1 hypothetical protein LOC100274437 - 2e-1 At5g15820 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.05 2e-27 123 Zm.15485.1.S1_at CD446373 - - 8e-1 At5g22000 RHF2A (RING-H2 GROUP F2A) C.G. S.X.
0.01 1e-1 38 Zm.8314.1.A1_at BM953578 hypothetical protein LOC100277461 - 6e+0 At2g38640 unknown protein C.G. S.X.
0.01 1e-1 38 Zm.3892.3.A1_at AF136829.1 elongation factor 1 alpha - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.01 1e-1 38 Zm.3892.6.A1_x_at CD441708 elongation factor 1 alpha - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.01 1e-1 38 Zm.3892.8.S1_at CA404367 Elongation factor 1 alpha - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.01 1e-1 38 Zm.3892.2.A1_a_at AF136824.1 elongation factor 1 alpha - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 1e-46 188 Arabidopsis thaliana At4g02930 828134 elongation factor Tu, putative / EF-Tu, putative F:translation elongation factor activity, ATP binding;P:translational elongation;C:mitochondrion, cell wall;BOMFPAV - - - C.G. S.X.
0.25 1e-34 149 Glycine max GmaAffx.68810.2.S1_at BQ611057 - - 2e-45 At4g02930 elongation factor Tu, putative / EF-Tu, putative C.G. S.X.
0.58 0 906 Hordeum vulgare Contig3262_at Contig3262 - - 1e-61 At4g02930 elongation factor Tu, putative / EF-Tu, putative C.G. S.X.
0.59 0 1178 Oryza sativa Os03g0851100 AF303468.1 - Eftu 2e-84 At4g02930 elongation factor Tu, putative / EF-Tu, putative C.G. S.X.
0.31 2e-48 194 Populus trichocarpa PtpAffx.178.1.S1_at CV263441 hypothetical protein - 2e-128 At4g02930 elongation factor Tu, putative / EF-Tu, putative C.G. S.X.
0.25 4e-71 270 Triticum aestivum Ta.22686.1.S1_at CA651598 - - 3e-17 At4g02930 elongation factor Tu, putative / EF-Tu, putative C.G. S.X.
0.20 2e-26 119 Vitis vinifera 1621437_at CF369119 - - 4e-65 At4g02930 elongation factor Tu, putative / EF-Tu, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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