Gene omics information

Query gene ID	Zm.5358.1.A1_at
Gene name	ras-related protein Rab11D
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.90	97.0	Zm.5358.1.A1_at	CF003205	ras-related protein Rab11D	-	9e-1	At2g01250	60S ribosomal protein L7 (RPL7B)	S.X.	H.G.	Please select
0.54	69.8	Zm.16305.1.A1_at	CA398833	-	-	9e-15	At3g15640	cytochrome c oxidase family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.6475.3.S1_at	AI737301	PHD finger protein	-	3e-18	At2g02470	AL6 (ALFIN-LIKE 6)	S.X.	H.G.	Please select
0.48	61.3	Zm.3646.1.A1_at	CA400978	hypothetical protein LOC100272696	-	2e-7	At4g26780	AR192	S.X.	H.G.	Please select
0.48	61.3	Zm.5364.1.S1_at	CF273142	-	-	9e-5	At3g09880	ATB' BETA	S.X.	H.G.	Please select
0.44	55.7	Zm.16854.1.S1_at	CF674957	hypothetical protein LOC100273231	-	1e-1	At3g18220	phosphatidic acid phosphatase family protein / PAP2 family protein	S.X.	H.G.	Please select
0.41	49.7	Zm.2529.1.A1_s_at	BQ539485	-	-	1e+0	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	S.X.	H.G.	Please select
0.36	41.3	Zm.253.1.A1_at	CF020390	hypothetical protein LOC100279053	-	5e+0	At5g29807	unknown protein	S.X.	H.G.	Please select
0.36	41.3	Zm.2530.1.A1_at	CF637153	-	-	7e-5	At1g58350	ZW18	S.X.	H.G.	Please select
0.35	38.9	Zm.11077.1.A1_at	BM336854	-	-	2e+1	At4g03205	coproporphyrinogen III oxidase, putative / coproporphyrinogenase, putative / coprogen oxidase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.8	97.2	GSM206309	Lower pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.9	96.7	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.3	96.1	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.1	95.9	GSM206297	Lower pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.7	95.4	GSM206334	Lower pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.6	95.2	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.5	95.1	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.4	94.9	GSM206291	Upper pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.2	94.5	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.2	94.5	GSM206302	Upper pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	4e-106	383	Zm.14385.1.S1_at	AW059976	hypothetical protein LOC100272235	-	1e-23	At5g65270	AtRABA4a (Arabidopsis Rab GTPase homolog A4a)	C.G.	S.X.	Please select
0.02	4e-7	54	Zm.16982.2.A1_at	BM080083	-	-	4e-8	At4g39990	RABA4B (RAB GTPASE HOMOLOG A4B)	C.G.	S.X.	Please select
0.02	4e-7	54	Zm.16982.2.S1_at	AY107397.1	-	-	3e-21	At4g32640	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.5168.1.A1_at	CD446730	hypothetical protein LOC100191535	-	2e-8	At1g06660	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	34	Zm.6502.1.A1_at	CF637388	ras-related protein RIC2	-	1e-35	At4g18800	ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D)	C.G.	S.X.	Please select
0.04	4e-1	34	Zm.12020.1.A1_at	BM382710	hypothetical protein LOC100216877	-	4e+0	At3g25572	CPuORF11 (Conserved peptide upstream open reading frame 11)	C.G.	S.X.	Please select
0.02	4e-1	34	Zm.10847.1.A1_at	CF627982	seryl-tRNA synthetase	-	1e-5	At1g11870	SRS (SERYL-TRNA SYNTHETASE)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.7707.1.S1_a_at	CK985938	Hypothetical protein LOC100193555	-	1e-2	At4g37210	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.752.1.S1_a_at	U89897.1	golgi associated protein se-wap41 /// hypothetical protein LOC100274298	-	3e-145	At3g02230	RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	9e-1	34	Arabidopsis thaliana	At2g01250	814652	60S ribosomal protein L7 (RPL7B)	F:structural constituent of ribosome, transcription regulator activity;P:translation;C:in 8 components;MOFAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.6580.1.A1_at	CD405980	-	-	7e-1	At1g54110	cation exchanger, putative (CAX10)	C.G.	S.X.	Please select
0.26	7e-34	143	Hordeum vulgare	Contig8562_at	Contig8562	-	-	2e-13	At3g15060	AtRABA1g (Arabidopsis Rab GTPase homolog A1g)	C.G.	S.X.	Please select
0.32	4e-23	109	Oryza sativa	Os10g0377400	AK111872.1	-	Ras-related protein Rab11D	7e-10	At4g39990	RABA4B (RAB GTPASE HOMOLOG A4B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.205026.1.S1_at	pmrna9950	hypothetical protein	-	3e+0	At5g62570	calmodulin-binding protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	4e-31	135	Triticum aestivum	Ta.2868.1.S1_at	CK168997	-	-	3e-12	At5g65270	AtRABA4a (Arabidopsis Rab GTPase homolog A4a)	C.G.	S.X.	Please select
0.08	4e-3	40	Vitis vinifera	1615972_at	CF215988	hypothetical protein LOC100249712	-	9e-33	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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