Gene omics information

Query gene ID	Zm.5357.1.S1_at
Gene name	hypothetical protein LOC100273070
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.5357.1.S1_at	AI619398	hypothetical protein LOC100273070	-	8e-4	At1g03110	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.5353.1.A1_at	AI619378	hypothetical protein LOC100276325	-	7e+0	At5g60110	APUM18 (Arabidopsis Pumilio 18)	S.X.	H.G.	Please select
0.67	85.8	Zm.15932.1.A1_at	AJ577238.1	beta3-glucuronyltransferase	-	8e-1	At5g28610	-	S.X.	H.G.	Please select
0.60	77.8	Zm.7240.1.S1_at	BI430972	-	-	1e-18	At5g61450	2-phosphoglycerate kinase-related	S.X.	H.G.	Please select
0.55	71.6	Zm.5355.1.A1_at	AI619386	hypothetical protein LOC100217125	-	2e-1	At3g24490	transcription factor	S.X.	H.G.	Please select
0.55	71.6	Zm.16593.4.S1_at	CA401361	hypothetical protein LOC100194160	-	2e-4	At5g51840	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.15933.1.A1_at	CA400453	-	-	2e-22	At3g61130	GAUT1 (GALACTURONOSYLTRANSFERASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.0	98.0	GSM205374	B73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.9	97.9	GSM205370	B73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.3	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM205375	Mo17xB73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
6.3	97.4	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
6.3	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.5	97.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	6e-3	42	Zm.6275.1.S1_a_at	AF540907.1	benzoxazin6	-	7e-1	At1g06640	2-oxoglutarate-dependent dioxygenase, putative	C.G.	S.X.	Please select
0.01	6e-3	42	Zm.6275.1.S1_at	AF540907.1	benzoxazin6	-	7e-1	At1g06640	2-oxoglutarate-dependent dioxygenase, putative	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.16346.1.A1_at	AY108153.1	hypothetical protein LOC100191168 /// 40S ribosomal protein S30	-	2e-8	At4g29390	40S ribosomal protein S30 (RPS30B)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.12600.1.S1_at	AY107340.1	-	-	2e-1	At5g61660	glycine-rich protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.7906.1.A1_at	BM268263	zinc finger homeodomain protein 1	-	6e-3	At3g28917	MIF2 (MINI ZINC FINGER 2)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.5996.1.A1_at	BM339606	hypothetical protein LOC100192012	-	1e-20	At3g27060	TSO2 (TSO meaning 'ugly' in Chinese)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.5825.1.A1_at	AI649790	hypothetical protein LOC100279429	-	1e-2	At1g10390	nucleoporin family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.5464.1.A1_at	AI622048	hypothetical protein LOC100272690	-	2e+0	At1g62790	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.5172.1.A1_at	BM266341	-	-	1e-1	At1g79960	OFP14 (OVATE FAMILY PROTEIN 14)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-4	46	Arabidopsis thaliana	At1g03110	839572	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MBFOPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	7e-5	50	Glycine max	Gma.11962.2.S1_at	BM523790	-	-	4e-1	At1g03110	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.55	1e-121	436	Hordeum vulgare	Contig8021_at	Contig8021	-	-	2e-1	At1g03110	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.56	3e-134	480	Oryza sativa	Os03g0746800	AK101718.1	-	Peptidase S9A, prolyl oligopeptidase, N-terminalbeta-propeller domain containing protein	9e-1	At1g03110	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-7	57	Populus trichocarpa	PtpAffx.120271.1.S1_at	CN523236	hypothetical protein	-	4e-10	At1g03110	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.40	9e-47	188	Triticum aestivum	Ta.4590.1.S1_at	BJ268433	-	-	7e+0	At5g27760	hypoxia-responsive family protein	C.G.	S.X.	Please select
0.02	9e-1	34	Vitis vinifera	1617795_at	CB002762	-	-	6e-1	At1g55080	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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