Gene omics information

Query gene ID	Zm.5329.1.A1_at
Gene name	hypothetical protein LOC100280090
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.54	69.8	Zm.5329.1.A1_at	AI619268	hypothetical protein LOC100280090	-	2e-5	At3g43790	ZIFL2 (ZINC INDUCED FACILITATOR-like 2)	S.X.	H.G.	Please select
0.68	86.1	Zm.14497.9.S1_at	BM382119	-	-	2e-15	At5g59910	HTB4	S.X.	H.G.	Please select
0.63	81.1	Zm.5143.1.A1_at	AY107731.1	hypothetical protein LOC100276623	-	1e-1	At1g74730	unknown protein	S.X.	H.G.	Please select
0.63	81.1	Zm.6096.1.A1_at	CF636033	hypothetical protein LOC100273833	-	6e-1	At4g39170	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	S.X.	H.G.	Please select
0.59	76.1	Zm.2806.1.A1_a_at	AW067337	-	-	6e-1	At2g41660	MIZ1 (mizu-kussei 1)	S.X.	H.G.	Please select
0.56	74.4	Zm.4813.1.S1_at	CD977978	-	-	5e-1	At1g35537	-	S.X.	H.G.	Please select
0.55	71.6	Zm.4860.2.A1_at	AI770577	-	-	3e+0	At2g34140	Dof-type zinc finger domain-containing protein	S.X.	H.G.	Please select
0.47	59.9	Zm.2849.1.S1_at	CD219229	shaggy-related protein kinase eta	-	4e-52	At1g06390	GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1)	S.X.	H.G.	Please select
0.47	59.9	Zm.18033.1.A1_at	BM080835	-	-	1e+0	At1g11240	unknown protein	S.X.	H.G.	Please select
0.42	51.3	Zm.796.1.A1_a_at	CK370719	-	-	3e-9	At5g53140	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.3	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.6	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.9	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.0	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.0	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	9e-3	40	Zm.1624.1.A1_at	BM349679	carbohydrate transporter/ sugar porter/ transporter	-	1e+0	At2g03850	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.15448.1.S1_at	CD448349	plastidic phosphate translocator-like protein1	-	4e-24	At4g32390	phosphate translocator-related	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.6634.1.A1_at	AI629925	-	-	3e-2	At2g33720	transcription factor	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.17510.1.A1_at	CK144409	hypothetical protein LOC100217109	-	6e-22	At1g08970	NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.13826.1.A1_at	AY104500.1	hypothetical protein LOC100273754	-	2e-5	At1g75200	flavodoxin family protein / radical SAM domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.13826.1.S1_at	BQ293656	-	-	2e-5	At1g75200	flavodoxin family protein / radical SAM domain-containing protein	C.G.	S.X.	Please select
0.03	9e+0	30	Zm.9430.1.A1_at	BM268822	-	-	2e-4	At1g71830	SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1)	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.816.1.A1_at	BM079799	-	-	7e+0	At5g04160	phosphate translocator-related	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.7380.1.S1_at	BM078135	hypothetical protein LOC100280093	-	6e-1	At1g51070	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-5	50	Arabidopsis thaliana	At3g43790	823490	ZIFL2 (ZINC INDUCED FACILITATOR-like 2)	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:response to nematode;C:membrane;BFOMAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.88105.1.S1_at	CA936277	-	-	2e-7	At5g24090	acidic endochitinase (CHIB1)	C.G.	S.X.	Please select
0.02	6e-1	34	Hordeum vulgare	Contig26103_at	Contig26103	-	-	1e-1	At5g51580	unknown protein	C.G.	S.X.	Please select
0.07	3e-9	63	Oryza sativa	Os11g0134900	AK069533.1	-	Major facilitator superfamily antiporter	1e+0	At3g43790	ZIFL2 (ZINC INDUCED FACILITATOR-like 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Populus trichocarpa	PtpAffx.61572.2.S1_a_at	CV251806	hypothetical protein	-	2e-26	At3g06580	GALK	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.18	1e-16	87	Triticum aestivum	Ta.19145.1.S1_at	CA647855	-	-	6e-2	At3g43790	ZIFL2 (ZINC INDUCED FACILITATOR-like 2)	C.G.	S.X.	Please select
0.04	2e+0	32	Vitis vinifera	1619886_at	CF414305	-	-	5e+0	At5g58590	RANBP1 (RAN BINDING PROTEIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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