CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.5323.1.A1_at

Gene name hypothetical protein LOC100194352

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 81.1 Zm.5323.1.A1_at CK827563 hypothetical protein LOC100194352 - 2e+0 At4g13968 - S.X. H.G.
0.67 85.8 Zm.264.2.A1_x_at CF012670 acetyl-coenzyme A carboxylase - 8e+0 At5g02890 transferase family protein S.X. H.G.
0.57 75.1 Zm.24.2.S1_at AJ001635.1 viviparous1 - 3e+0 At2g40765 unknown protein S.X. H.G.
0.50 65.7 Zm.4618.1.A1_at AW066311 pre-mRNA-splicing factor ISY1 - 4e-7 At3g18790 - S.X. H.G.
0.46 58.4 Zm.1047.1.S1_at CB381142 hypothetical protein LOC100277178 - 1e+0 At1g10865 - S.X. H.G.
0.44 55.7 Zm.24.2.S1_a_at AJ001635.1 viviparous1 - 3e+0 At2g40765 unknown protein S.X. H.G.
0.42 51.3 Zm.10865.1.A1_at CF638037 hypothetical protein LOC100275271 - 1e-6 At2g44090 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.4 97.0 GSM206307 Lower pulvinus 5 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.3 96.9 GSM385709 Deep-sowing 10d treatment TIBA, biological rep1 GSE15371 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
4.7 96.5 GSM206305 Right pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.7 96.5 GSM206302 Upper pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.6 96.4 GSM385707 Deep-sowing 10d treatment IAA, biological rep1 GSE15371 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
4.1 95.9 GSM206300 Upper pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.1 95.9 GSM206299 Left pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.1 95.9 GSM206308 Lower pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.0 95.8 GSM375791 Deep-sowing 10d treatment GA3, biological rep1 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
4.0 95.8 GSM375794 Deep-sowing 10d treatment UCZ, biological rep1 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-1 36 Zm.13739.1.S1_at AY106154.1 hypothetical protein LOC100273644 - 3e+0 At5g15390 tRNA/rRNA methyltransferase (SpoU) family protein C.G. S.X.
0.01 1e+0 34 Zm.97.1.S1_at BM073786 Eukaryotic initiation factor-5 - 1e-24 At1g36730 eukaryotic translation initiation factor 5, putative / eIF-5, putative C.G. S.X.
0.01 1e+0 34 Zm.4335.3.A1_at AY109325.1 - - 1e-3 At2g24050 MIF4G domain-containing protein / MA3 domain-containing protein C.G. S.X.
0.01 1e+0 34 Zm.4335.3.S1_at AY109325.1 - - 1e-3 At3g60240 - C.G. S.X.
0.01 1e+0 34 Zm.16123.1.S1_at CF075404 - - 1e-2 At2g37570 SLT1 (sodium- and lithium-tolerant 1) C.G. S.X.
0.01 4e+0 32 Zm.7133.1.A1_at CK369431 hypothetical protein LOC100272867 - 2e-19 At2g45790 PMM (PHOSPHOMANNOMUTASE) C.G. S.X.
0.01 4e+0 32 Zm.7057.1.A1_at BM078889 - - 1e-2 At1g68020 ATTPS6 C.G. S.X.
0.01 4e+0 32 Zm.4343.1.A1_at AY110641.1 hypothetical protein LOC100193036 - 2e+0 At5g28750 thylakoid assembly protein, putative C.G. S.X.
0.01 4e+0 32 Zm.4347.1.A1_at CD434952 - - 1e-2 At3g60340 palmitoyl protein thioesterase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Arabidopsis thaliana At4g13968 3770300 - Encodes a defensin-like (DEFL) family protein. - - - C.G. S.X.
0.03 9e-1 36 Glycine max Gma.12726.1.A1_at CD395045 - - 2e-1 At2g47120 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.28 4e-99 361 Hordeum vulgare Contig10253_at Contig10253 - - 3e-1 At1g51745 - C.G. S.X.
0.25 1e-126 454 Oryza sativa Os01g0367300 AK101567.1 - Conserved hypothetical protein 2e+0 At2g19040 RALFL12 (RALF-LIKE 12) C.G. S.X.
0.02 9e-1 36 Populus trichocarpa PtpAffx.212534.1.S1_at pmrna24549 hypothetical protein - 5e-2 At2g41410 calmodulin, putative C.G. S.X.
0.28 1e-100 367 Triticum aestivum Ta.6061.1.A1_at BJ272216 - - 8e-1 At3g29300 unknown protein C.G. S.X.
0.02 7e-1 34 Vitis vinifera 1620916_at CD714269 hypothetical protein LOC100256469 - 1e+0 At3g06270 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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