CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.5319.1.S1_a_at

Gene name lipoxygenase

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 71.6 Zm.5319.1.S1_a_at AY103567.1 lipoxygenase - 4e-7 At3g22400 LOX5 S.X. H.G.
0.33 36.0 Zm.8376.1.S1_at BM073880 hypothetical protein LOC100280303 - 4e-1 At3g44590 60S acidic ribosomal protein P2 (RPP2D) S.X. H.G.
0.32 33.4 Zm.8945.1.S1_at AY103889.1 - - 2e-85 At5g18580 FASS (FASS 1) S.X. H.G.
0.26 22.7 Zm.5065.1.S1_x_at BM318796 Diacylglycerol kinase 1 - 9e+0 At2g39630 glycosyl transferase family 2 protein S.X. H.G.
0.22 16.9 Zm.16305.1.A1_at CA398833 - - 9e-15 At3g15640 cytochrome c oxidase family protein S.X. H.G.
0.11 5.3 Zm.5237.1.A1_at AY107290.1 hypothetical protein LOC100273890 - 2e-19 At1g47260 GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.2 98.5 GSM206288 Upper pulvinus 2 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
9.3 98.2 GSM206310 Lower pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
9.0 98.2 GSM206307 Lower pulvinus 5 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.8 97.9 GSM206304 Upper pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.8 97.9 GSM206287 Left pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.2 97.8 GSM206298 Lower pulvinus 60 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.0 97.7 GSM206295 Lower pulvinus 5 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
6.5 97.5 GSM206308 Lower pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
6.4 97.5 GSM206299 Left pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
6.4 97.5 GSM206309 Lower pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 0 872 Zm.4596.1.A1_at CF636987 lipoxygenase - 4e-1 At5g17670 hydrolase, acting on ester bonds C.G. S.X.
0.36 4e-98 359 Zm.445.1.S1_at AF329371.1 Lipoxygenase - 6e-3 At3g22400 LOX5 C.G. S.X.
0.28 1e-36 155 Zm.3303.1.A1_x_at AF271894.1 lipoxygenase - 6e-6 At3g22400 LOX5 C.G. S.X.
0.28 1e-36 155 Zm.3303.1.A1_at AF271894.1 lipoxygenase - 6e-6 At3g22400 LOX5 C.G. S.X.
0.19 2e-28 127 Zm.3303.2.A1_at CO527646 lipoxygenase - 3e+0 At3g22400 LOX5 C.G. S.X.
0.04 3e-12 73 Zm.445.2.A1_at AF457968.1 Lipoxygenase - 4e+0 At5g47600 heat shock protein-related C.G. S.X.
0.04 3e-12 73 Zm.445.2.S1_a_at AF457968.1 lipoxygenase - 4e+0 At5g47600 heat shock protein-related C.G. S.X.
0.04 7e-4 46 Zm.14487.1.S1_at AY104322.1 lipoxygenase - 7e-3 At3g45140 LOX2 (LIPOXYGENASE 2) C.G. S.X.
0.01 2e-1 38 Zm.2800.1.A1_at BG842849 hypothetical protein LOC100193119 - 6e-11 At3g09100 mRNA capping enzyme family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-7 57 Arabidopsis thaliana At3g22400 821808 LOX5 F:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:root development;C:chloroplast;PMBFO - - - C.G. S.X.
0.01 6e-1 38 Glycine max Gma.1.1.A1_at U36442.1 lipoxygenase - 5e-1 At5g20180 ribosomal protein L36 family protein C.G. S.X.
0.55 5e-153 541 Hordeum vulgare Contig1737_at Contig1737 - - 6e-3 At1g55020 LOX1 C.G. S.X.
0.59 0 1170 Oryza sativa Os03g0700700 AK072689.1 - Lipoxygenase (EC 1.13.11.12) 3e-5 At3g22400 LOX5 C.G. S.X.
0.04 9e-3 44 Populus trichocarpa Ptp.6239.1.S1_at DN490661 hypothetical protein - 4e-8 At1g55020 LOX1 C.G. S.X.
0.52 1e-140 502 Triticum aestivum Ta.9742.1.S1_at CK192897 - - 4e-7 At1g72520 lipoxygenase, putative C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1610344_at BQ796295 hypothetical protein LOC100246080 - 9e-22 At1g21000 zinc-binding family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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