CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.5305.1.A1_at

Gene name ribonucleoprotein A

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 Zm.5305.1.A1_at CK370425 ribonucleoprotein A - 6e-4 At2g37220 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative S.X. H.G.
0.61 79.5 Zm.3303.2.A1_at CO527646 lipoxygenase - 3e+0 At3g22400 LOX5 S.X. H.G.
0.60 77.8 Zm.155.2.S1_at AY109498.1 - - 4e-3 At4g32400 SHS1 (SODIUM HYPERSENSITIVE 1) S.X. H.G.
0.57 75.1 Zm.7598.1.A1_at CF629653 - - 3e-3 At2g40510 40S ribosomal protein S26 (RPS26A) S.X. H.G.
0.55 71.6 Zm.6558.1.S1_at AF073329.1 eukaryotic initiation factor3 - 1e-10 At4g11420 EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) S.X. H.G.
0.36 41.3 Zm.768.1.A1_at BG355197 - - 3e+0 At2g27750 nucleolar matrix protein-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.9 98.2 GSM253252 ZM_24h_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
8.8 98.1 GSM253244 ZM_12h_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
8.7 98.1 GSM253245 ZM_12h_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
8.7 98.1 GSM253247 ZM_12h_SG200_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
8.0 98.0 GSM323171 Zm_SG200Dpep1_24hpi_II GSE12892 Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
7.2 97.8 GSM253251 ZM_24h_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
6.8 97.6 GSM253248 ZM_12h_SG200_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
6.7 97.6 GSM253255 ZM_24h_SG200_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
5.6 97.1 GSM253250 ZM_24h_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
5.5 97.1 GSM253246 ZM_12h_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 1e-36 153 Zm.15888.1.S1_at CD998622 ribonucleoprotein A - 6e-4 At2g37220 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative C.G. S.X.
0.30 8e-23 107 Zm.3118.1.S1_at AY103914.1 hypothetical protein LOC100274547 - 9e-3 At2g37220 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative C.G. S.X.
0.16 2e-20 99 Zm.5152.1.A1_at AY105529.1 hypothetical protein LOC100275689 - 2e+0 At3g53460 CP29 C.G. S.X.
0.08 2e-20 99 Zm.5152.1.S1_at AY105529.1 - - 2e+0 At3g53460 CP29 C.G. S.X.
0.01 1e+0 34 Zm.9181.1.A1_at CA402930 hypothetical protein LOC100192510 - 5e-2 At2g28710 zinc finger (C2H2 type) family protein C.G. S.X.
0.02 1e+0 34 Zm.7899.1.A1_at BM080344 hypothetical protein LOC100193249 - 1e+0 At1g65820 microsomal glutathione s-transferase, putative C.G. S.X.
0.03 1e+0 34 Zm.5994.1.A1_at CF056325 ribonucleoprotein - 2e-10 At4g24770 RBP31 (31-KDA RNA BINDING PROTEIN) C.G. S.X.
0.02 1e+0 34 Zm.4937.1.S1_at BQ703720 hypothetical protein LOC100272251 - 4e-1 At2g22630 AGL17 (agamous-like 17) C.G. S.X.
0.01 1e+0 34 Zm.14441.1.A1_at CO531121 HAD-superfamily hydrolase, subfamily IIA - 3e-3 At5g10460 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 6e-4 46 Arabidopsis thaliana At2g37220 818299 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative Encodes a chloroplast RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. - - - C.G. S.X.
0.13 2e-7 57 Glycine max Gma.15462.3.S1_at BQ298325 - - 3e-15 At3g53460 CP29 C.G. S.X.
0.33 1e-49 196 Hordeum vulgare Contig5988_at Contig5988 - - 9e-3 At2g37220 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative C.G. S.X.
0.39 2e-79 297 Oryza sativa Os03g0376600 AK068720.1 - 29 kDa ribonucleoprotein A, chloroplast precursor(CP29A) 4e-2 At3g53460 CP29 C.G. S.X.
0.12 5e-8 59 Populus trichocarpa PtpAffx.213506.1.S1_at pmrna26403 hypothetical protein - 3e-17 At3g53460 CP29 C.G. S.X.
0.48 8e-130 464 Triticum aestivum TaAffx.112325.1.S1_at CA624889 - - 3e+0 At3g10020 unknown protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1617311_at CB344329 hypothetical protein LOC100257045 - 1e-16 At4g24770 RBP31 (31-KDA RNA BINDING PROTEIN) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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