Gene omics information

Query gene ID	Zm.5289.2.A1_a_at
Gene name	hypothetical protein LOC100274172
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.5289.2.A1_a_at	AI600945	hypothetical protein LOC100274172	-	1e-30	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	S.X.	H.G.	Please select
0.80	94.0	Zm.12546.2.A1_at	AI770557	-	-	3e+0	At5g56150	UBC30 (ubiquitin-conjugating enzyme 30)	S.X.	H.G.	Please select
0.61	79.5	Zm.19037.1.S1_at	CA404446	-	-	1e-30	At3g50530	CRK (CDPK-related kinase)	S.X.	H.G.	Please select
0.55	71.6	Zm.455.2.A1_at	BM078476	dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex	-	2e-13	At3g13930	dihydrolipoamide S-acetyltransferase, putative	S.X.	H.G.	Please select
0.26	22.7	Zm.17510.1.A1_at	CK144409	hypothetical protein LOC100217109	-	6e-22	At1g08970	NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)	S.X.	H.G.	Please select
0.19	12.8	Zm.186.1.S1_at	X71396.1	Bowman-Birk type wound-induced proteinase inhibitor WIP1	-	1e+0	At1g20000	TAF11b (TBP-ASSOCIATED FACTOR 11b)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.5	92.6	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.3	91.7	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.3	91.7	GSM205370	B73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.3	91.7	GSM205375	Mo17xB73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.2	91.3	GSM205374	B73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.2	91.3	GSM205376	B73xMo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.2	91.3	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.1	90.8	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.1	90.8	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.0	90.2	GSM202313	B73xMo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-1	36	Zm.11840.1.A1_at	CO524568	metallopeptidase	-	4e-9	At4g20070	ATAAH (Arabidopsis thaliana Allantoate Amidohydrolase)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.7466.1.S1_at	AY108612.1	integral membrane protein like	-	1e-15	At1g06890	transporter-related	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.6071.1.A1_at	CF046477	-	-	4e-5	At2g45620	nucleotidyltransferase family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.3550.1.A1_at	CF624216	sucrose synthase1	-	8e-12	At3g43190	SUS4	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.17882.1.S1_at	AW090884	-	-	4e+0	At5g55856	-	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.10024.1.S1_at	BQ529117	-	-	3e-9	At3g08640	alphavirus core protein family	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.95.1.A1_at	X79935.1	DNA binding with one finger3	-	8e-22	At2g37590	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.9047.1.A1_at	BM266786	-	-	2e+0	At5g25840	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.9166.1.A1_at	BM268864	-	-	2e-2	At3g24830	60S ribosomal protein L13A (RPL13aB)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	1e-30	135	Arabidopsis thaliana	At2g33040	817866	ATP synthase gamma chain, mitochondrial (ATPC)	F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP synthesis coupled proton transport;C:in 7 components;OBMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	6e-39	163	Glycine max	Gma.17344.1.S1_at	CD409198	-	-	7e-41	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please select
0.56	3e-159	561	Hordeum vulgare	Contig2722_at	Contig2722	-	-	2e-32	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please select
0.53	3e-162	573	Oryza sativa	Os10g0320400	AK072694.1	-	ATP synthase gamma chain, mitochondrial precursor(EC 3.6.3.14)	1e-48	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	5e-21	103	Populus trichocarpa	PtpAffx.249.66.A1_s_at	CV227553	hypothetical protein	-	2e-52	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.47	1e-150	533	Triticum aestivum	Ta.14480.2.S1_at	BU099921	-	-	3e-28	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please select
0.32	4e-52	204	Vitis vinifera	1611755_at	CB918301	hypothetical protein LOC100246670	-	4e-27	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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