Gene omics information

Query gene ID	Zm.5279.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	90.8	Zm.5279.1.S1_at	AY106402.1	-	-	8e+0	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	S.X.	H.G.	Please select
0.67	85.8	Zm.3423.1.A1_at	AY110813.1	hypothetical protein LOC100280412	-	3e-3	At4g24040	TRE1 (TREHALASE 1)	S.X.	H.G.	Please select
0.64	81.7	Zm.2094.1.S1_at	CD651096	hypothetical protein LOC100192908	-	8e-19	At2g36060	ubiquitin-conjugating enzyme family protein	S.X.	H.G.	Please select
0.55	71.6	Zm.18436.1.A1_at	CO521866	-	-	6e-1	At4g19003	VPS25	S.X.	H.G.	Please select
0.52	67.3	Zm.2378.1.A1_at	BQ485596	-	-	8e-10	At1g70750	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.6293.1.A1_at	CF038760	hypothetical protein LOC100216905	-	4e+0	At5g08400	unknown protein	S.X.	H.G.	Please select
0.48	61.3	Zm.7941.1.A1_at	BM080529	-	-	1e+0	At3g50040	unknown protein	S.X.	H.G.	Please select
0.48	61.3	Zm.851.1.S1_at	CF007204	hypothetical protein LOC100275940	-	3e-8	At1g10590	DNA-binding protein-related	S.X.	H.G.	Please select
0.48	61.3	Zm.1158.1.A1_at	AY107067.1	-	-	4e-31	At5g10270	CDKC	S.X.	H.G.	Please select
0.47	59.9	Zm.9201.1.A1_at	BM340120	hypothetical protein LOC100272902	-	6e+0	At5g62540	UBC3 (ubiquitin-conjugating enzyme 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.2	98.9	GSM206295	Lower pulvinus 5 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
13.5	98.8	GSM206299	Left pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
13.5	98.8	GSM206300	Upper pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
12.7	98.7	GSM206289	Upper pulvinus 5 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
12.1	98.6	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.9	98.6	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.8	98.6	GSM206304	Upper pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.6	98.6	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.8	98.3	GSM206293	Right pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.7	98.1	GSM206287	Left pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-3	42	ZmAffx.723.1.A1_at	AI739914	-	-	8e-1	At3g07150	unknown protein	C.G.	S.X.	Please select
0.03	3e-3	42	ZmAffx.723.1.S1_at	AI739914	-	-	8e-1	At3g07150	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	Zm.9157.1.A1_at	CB351321	molybdenum cofactor synthesis protein 2 large subunit	-	7e+0	At1g50760	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.602.1.A1_a_at	AF326486.1	NOD26-like membrane intrinsic protein3	-	4e-3	At4g10380	NIP5	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.3655.1.S1_at	BU037691	-	-	1e-2	At1g05300	ZIP5	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.18096.1.A1_at	CF635434	-	-	4e+0	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.9169.1.A1_at	BQ538269	hypothetical protein LOC100273080	-	4e-1	At2g47970	NPL4 family protein	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.8233.1.S1_a_at	AY103797.1	-	-	6e-14	At2g24590	splicing factor, putative	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.8233.1.A1_at	AI947630	-	-	1e-2	At4g31580	SRZ-22	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e+0	32	Arabidopsis thaliana	At5g64310	836552	AGP1 (ARABINOGALACTAN PROTEIN 1)	Encodes arabinogalactan-protein (AGP1).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-1	36	Glycine max	PsAffx.CL1456Contig1_at	PsAffx.CL1456Contig1	-	-	4e+0	At3g59060	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)	C.G.	S.X.	Please select
0.03	2e-1	36	Hordeum vulgare	S0000800046E03F1_x_at	S0000800046E03F1	-	-	4e-2	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	C.G.	S.X.	Please select
0.15	3e-19	97	Oryza sativa	Os01g0753800	AK121555.1	-	Conserved hypothetical protein	3e+0	At5g47640	NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-1	36	Populus trichocarpa	PtpAffx.217484.1.S1_at	pmrna32769	hypothetical protein	-	6e+0	At2g03230	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	4e-17	89	Triticum aestivum	TaAffx.114447.1.S1_at	CN011130	-	-	5e+0	At1g37140	MCT1 (mei2 C-Terminal RRM only like 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1621757_at	CF373247	-	-	8e-1	At1g29960	peptidase/ serine-type peptidase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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