Gene omics information

Query gene ID	Zm.5277.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.5277.1.A1_at	AI619073	-	-	1e+0	At4g39750	F-box family protein-related	S.X.	H.G.	Please select
0.40	48.5	Zm.18556.1.S1_at	CO049296	versicolorin reductase	-	3e+0	At1g11230	unknown protein	S.X.	H.G.	Please select
0.31	31.6	Zm.45.1.A1_at	D14576.1	glutamine synthetase5	-	2e-51	At3g17820	ATGSKB6	S.X.	H.G.	Please select
0.25	21.3	Zm.608.1.S1_at	AF326496.1	plasma membrane integral protein ZmPIP2-7	-	9e-21	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	S.X.	H.G.	Please select
0.17	10.6	Zm.2699.1.A1_at	AW066891	hypothetical protein LOC100193918	-	1e+1	At5g16170	unknown protein	S.X.	H.G.	Please select
0.16	9.4	Zm.19237.1.A1_at	CA402877	hypothetical protein LOC100216898	-	2e-1	At3g49010	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.2	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
6.9	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM205367	Mo17xB73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.6	97.1	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.6	97.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM205368	B73xMo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.2	96.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	1031	Zm.5277.1.S1_at	AI619073	-	-	1e+0	At4g39750	F-box family protein-related	C.G.	S.X.	Please select
0.05	3e-2	38	Zm.11697.1.A1_at	CF272745	-	-	1e+0	At4g04620	ATG8B (autophagy 8b)	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.6711.1.A1_at	AY104120.1	transcription initiation factor IIA gamma chain	-	4e-29	At4g24440	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.18044.1.A1_at	AF519538.1	RNA polymerase II largest subunit	-	2e-123	At4g35800	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.18044.1.S1_at	AF519538.1	RNA polymerase II largest subunit	-	2e-123	At4g35800	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.8326.1.A1_at	BM073693	-	-	1e+0	At5g07100	WRKY26	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.566.1.S1_at	AF244706.1	glutathione transferase41	-	1e+1	At3g09280	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.13613.1.A1_at	CF623212	hypothetical protein LOC100275557	-	3e-6	At4g21490	NDB3	C.G.	S.X.	Please select
0.03	2e+0	32	ZmAffx.1055.1.A1_at	AI881878	-	-	5e-2	At4g01940	NFU1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At4g39750	830131	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	HgAffx.14103.1.S1_at	CB824748	-	-	4e+0	At4g19920	disease resistance protein (TIR class), putative	C.G.	S.X.	Please select
0.10	4e-14	77	Hordeum vulgare	Contig15106_at	Contig15106	-	-	1e-2	At3g04370	PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)	C.G.	S.X.	Please select
0.03	4e-5	50	Oryza sativa	Os09g0502100	9637.m02853	-	Hypothetical protein	1e-1	At4g15150	glycine-rich protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.50880.1.S1_at	CV229014	hypothetical protein	-	2e-1	At5g12450	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	8e-14	77	Triticum aestivum	Ta.11470.1.A1_at	BQ170163	-	-	3e+0	At3g05460	sporozoite surface protein-related	C.G.	S.X.	Please select
0.03	2e-2	38	Vitis vinifera	1612392_at	BQ798838	-	-	4e+0	At3g49580	LSU1 (RESPONSE TO LOW SULFUR 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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