Gene omics information

Query gene ID	Zm.524.1.S1_at
Gene name	MADS box protein 2
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	75.1	Zm.524.1.S1_at	AF112149.1	MADS box protein 2	-	6e-17	At3g57230	AGL16 (AGAMOUS-LIKE 16)	S.X.	H.G.	Please select
0.38	44.2	Zm.5789.6.A1_x_at	AI374534	hypothetical protein LOC100192516	-	5e-28	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	S.X.	H.G.	Please select
0.33	36.0	Zm.3513.1.A1_at	CA404391	-	-	6e-5	At1g07705	transcription regulator	S.X.	H.G.	Please select
0.22	16.9	Zm.16356.2.A1_at	BQ487089	-	-	2e-1	At1g67590	remorin family protein	S.X.	H.G.	Please select
0.18	11.6	Zm.17305.1.A1_at	CK369773	hypothetical protein LOC100275875	-	1e+0	At2g33690	late embryogenesis abundant protein, putative / LEA protein, putative	S.X.	H.G.	Please select
0.12	5.9	Zm.341.2.A1_a_at	AI881632	-	-	8e-44	At5g07090	40S ribosomal protein S4 (RPS4B)	S.X.	H.G.	Please select
0.10	4.6	Zm.3797.1.S1_at	BU097764	pollen allergen Phl p 11	-	8e+0	At5g48720	XRI1 (X-RAY INDUCED TRANSCRIPT 1)	S.X.	H.G.	Please select
0.10	4.6	Zm.3066.1.A1_at	M33103.1	hypothetical protein LOC100280011	-	7e-5	At1g20620	CAT3 (CATALASE 3)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.7	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.1	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.0	99.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.7	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.0	99.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.0	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.4	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.7	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.7	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	3e-35	149	Zm.15206.1.A1_at	BM268642	-	-	6e-18	At3g57230	AGL16 (AGAMOUS-LIKE 16)	C.G.	S.X.	Please select
0.08	7e-24	111	Zm.9560.1.A1_at	BM382073	m17 protein	-	3e-2	At1g77080	-	C.G.	S.X.	Please select
0.07	2e-21	103	Zm.4424.1.A1_at	CO526301	m24 protein	-	5e-2	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.09	2e-21	103	Zm.335.1.S1_a_at	BM078498	Zea mays MADS16	-	3e-2	At3g57390	AGL18	C.G.	S.X.	Please select
0.10	3e-20	99	Zm.270.1.S1_at	U31522.1	hypothetical protein LOC100216659	-	8e-19	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please select
0.07	1e-19	97	Zm.15830.1.A1_at	AI491392	-	-	3e-5	At4g22950	AGL19 (AGAMOUS-LIKE 19)	C.G.	S.X.	Please select
0.08	6e-18	91	Zm.3907.1.S1_at	L81162.2	AGAMOUS-like protein /// M2 protein	-	3e-15	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.07	1e-16	87	Zm.6382.1.A1_at	AI691625	m31 protein	-	4e-2	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.08	4e-16	85	Zm.134.1.S1_at	U31521.1	Zea AGAMOUS homolog2	-	5e-11	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	6e-17	89	Arabidopsis thaliana	At3g57230	824890	AGL16 (AGAMOUS-LIKE 16)	MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-9	65	Glycine max	PsAffx.C72000038_at	PsAffx.C72000038	-	-	1e+1	At5g58260	-	C.G.	S.X.	Please select
0.09	2e-18	93	Hordeum vulgare	Contig11029_at	Contig11029	-	-	2e-10	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please select
0.44	3e-85	317	Oryza sativa	Os02g0579600	AY177696.1	-	Transcription factor MADS27	7e-19	At3g57230	AGL16 (AGAMOUS-LIKE 16)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	2e-11	71	Populus trichocarpa	PtpAffx.201979.1.S1_at	pmrna3951	hypothetical protein	-	3e-26	At3g57230	AGL16 (AGAMOUS-LIKE 16)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	3e-28	127	Triticum aestivum	Ta.27776.1.S1_at	BJ274612	MADS-box transcription factor TaAGL2	-	3e-12	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.08	2e-4	46	Vitis vinifera	1607973_at	CB969561	-	-	7e-4	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage