Gene omics information

Query gene ID	Zm.5225.1.A1_at
Gene name	hypothetical protein LOC100273591
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.5225.1.A1_at	AI615012	hypothetical protein LOC100273591	-	4e-2	At5g48740	leucine-rich repeat family protein / protein kinase family protein	S.X.	H.G.	Please select
0.77	92.1	Zm.5600.2.A1_a_at	BM333382	thioredoxin H-type 5	-	2e+0	At1g19050	ARR7 (RESPONSE REGULATOR 7)	S.X.	H.G.	Please select
0.71	88.2	Zm.15607.1.S1_at	CA399646	-	-	3e-1	At4g21902	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.10459.1.S1_at	BQ577894	hypothetical protein LOC100276110	-	2e+0	At5g16460	-	S.X.	H.G.	Please select
0.46	58.4	Zm.13827.1.S1_at	CF014663	-	-	2e-9	At5g11380	DXPS3 (1-deoxy-D-xylulose 5-phosphate synthase 3)	S.X.	H.G.	Please select
0.21	15.5	Zm.4775.1.A1_at	CK826898	-	-	1e-1	At2g36695	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.4	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-5	50	Zm.305.1.A1_at	U67422.1	crinkly4	-	4e-29	At3g59420	ACR4 (ARABIDOPSIS CRINKLY4)	C.G.	S.X.	Please select
0.04	4e-3	42	Zm.3405.1.A1_at	AI737775	-	-	4e-4	At2g30940	protein kinase family protein	C.G.	S.X.	Please select
0.03	2e-1	36	ZmAffx.1020.1.A1_at	AI881536	-	-	3e-7	At1g75640	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please select
0.03	2e-1	36	ZmAffx.1020.1.S1_at	AI881536	-	-	3e-7	At1g75640	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.721.1.A1_at	BM267834	Salt-inducible putative protein serine/threonine/tyrosine kinase	-	1e-33	At1g06700	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.8884.1.A1_at	CF018008	hypothetical protein LOC100280133	-	3e-9	At3g48890	ATMP2	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.7107.1.S1_at	CF051037	RNA-binding protein 25	-	4e-2	At5g19960	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.03	4e+0	32	ZmAffx.914.1.A1_at	AI770970	-	-	2e-20	At5g13160	PBS1 (avrPphB susceptible 1)	C.G.	S.X.	Please select
0.03	4e+0	32	ZmAffx.914.1.S1_at	AI770970	protein kinase APK1A	-	2e-20	At5g13160	PBS1 (avrPphB susceptible 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-2	40	Arabidopsis thaliana	At5g48740	834932	leucine-rich repeat family protein / protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-6	54	Glycine max	Gma.4832.1.A1_at	AW310458	-	-	3e-1	At1g24590	DRNL (DORNROSCHEN-LIKE)	C.G.	S.X.	Please select
0.47	2e-54	212	Hordeum vulgare	Contig18914_at	Contig18914	-	-	3e-2	At3g02810	protein kinase family protein	C.G.	S.X.	Please select
0.40	2e-69	264	Oryza sativa	OsAffx.10878.2.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-5	50	Populus trichocarpa	PtpAffx.224679.1.S1_at	pmrna43461	hypothetical protein	-	1e-1	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	1e-32	141	Triticum aestivum	Ta.25825.1.A1_at	CD453373	-	-	9e-2	At1g48320	thioesterase family protein	C.G.	S.X.	Please select
0.05	4e-5	48	Vitis vinifera	1612735_at	CB976938	hypothetical protein LOC100267773	-	3e-2	At3g24540	protein kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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