Gene omics information

Query gene ID	Zm.5220.1.S1_at
Gene name	hypothetical protein LOC100279470
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.5220.1.S1_at	AI614989	hypothetical protein LOC100279470	-	1e+0	At5g36120	CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)	S.X.	H.G.	Please select
0.91	99.0	Zm.5441.1.S1_at	CO528962	hypothetical protein LOC100274317	-	3e+0	At3g23130	SUP (SUPERMAN)	S.X.	H.G.	Please select
0.83	95.6	Zm.18590.1.A1_at	AW562614	exostosin-like	-	1e+0	At5g22930	unknown protein	S.X.	H.G.	Please select
0.77	92.1	ZmAffx.1097.1.S1_at	AW120085	-	-	1e+1	At5g25770	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.16482.2.A1_at	BM337760	-	-	9e-19	At3g09630	60S ribosomal protein L4/L1 (RPL4A)	S.X.	H.G.	Please select
0.55	71.6	Zm.1546.3.A1_x_at	CK369824	-	-	1e-6	At1g15270	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.8	99.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.8	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1251	Zm.5220.1.A1_at	BQ279461	-	-	1e+0	At5g36120	CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.5711.1.S1_at	BM378175	-	-	7e+0	At4g19400	actin binding	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.3824.1.S1_at	AW424570	-	-	2e-35	At3g23340	ckl10 (Casein Kinase I-like 10)	C.G.	S.X.	Please select
0.03	6e-1	34	Zm.14256.1.A1_at	BM381492	-	-	5e-2	At1g07790	HTB1	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5935.1.A1_at	CF633631	hypothetical protein LOC100194239	-	2e+0	At3g12260	complex 1 family protein / LVR family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.442.1.S1_at	AF104924.2	unconventional myosin heavy chain	-	5e-48	At5g20490	XIK	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4121.1.A1_at	BG266655	ARP2/3 complex 34 kDa subunit	-	1e-8	At1g30825	DIS2 (DISTORTED TRICHOMES 2)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.2684.1.A1_at	AW066853	-	-	3e+0	At1g49510	emb1273 (embryo defective 1273)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.17576.1.S1_at	CO521961	protein transporter	-	1e+0	At2g38410	VHS domain-containing protein / GAT domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g36120	833608	CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)	F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast thylakoid membrane, chloroplast;BOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	GmaAffx.63192.2.S1_s_at	BF071360	-	-	2e-5	At5g17990	TRP1 (tryptophan biosynthesis 1)	C.G.	S.X.	Please select
0.16	5e-11	67	Hordeum vulgare	Contig11459_at	Contig11459	-	-	3e-1	At1g09050	unknown protein	C.G.	S.X.	Please select
0.10	5e-14	79	Oryza sativa	Os07g0568200	AK102232.1	-	Homeodomain-like containing protein	2e-6	At2g47820	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.211126.1.S1_at	pmrna21857	hypothetical protein	-	9e-1	At5g24510	60s acidic ribosomal protein P1, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	32	Triticum aestivum	TaAffx.599.2.A1_at	BQ168661	-	-	2e+0	At4g12340	-	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1620800_at	CB834288	-	-	3e-1	Atmg00030	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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