Gene omics information

Query gene ID	Zm.5194.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.5194.1.A1_at	BM269267	-	-	1e-3	At2g46070	MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12)	S.X.	H.G.	Please select
0.83	95.6	Zm.2806.1.A1_a_at	AW067337	-	-	6e-1	At2g41660	MIZ1 (mizu-kussei 1)	S.X.	H.G.	Please select
0.80	94.0	ZmAffx.1020.1.A1_at	AI881536	-	-	3e-7	At1g75640	leucine-rich repeat family protein / protein kinase family protein	S.X.	H.G.	Please select
0.80	94.0	Zm.16532.2.A1_at	AW331554	60S ribosomal protein L18a	-	4e-69	At3g14600	60S ribosomal protein L18A (RPL18aC)	S.X.	H.G.	Please select
0.42	51.3	Zm.384.1.A1_at	AF001635.1	physical impedance induced protein2	-	6e+0	At5g03100	F-box family protein	S.X.	H.G.	Please select
0.31	31.6	Zm.14497.9.S1_at	BM382119	-	-	2e-15	At5g59910	HTB4	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.6	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.3	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.2	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-4	46	Zm.9515.1.S1_at	AY433815.1	salt-induced MAP kinase 1	-	5e-24	At4g01370	ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4)	C.G.	S.X.	Please select
0.03	6e-4	44	Zm.218.2.A1_at	CF634511	ABA stimulation MAP kinase	-	2e-31	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.218.1.A1_at	AB016802.1	MAP kinase 5	-	2e-50	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.218.1.A1_a_at	AB016802.1	ABA stimulation MAP kinase	-	6e-42	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.16344.1.S1_at	CF349134	prostaglandin E synthase 3	-	2e-6	At3g03773	-	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.12226.1.A1_at	AY104247.1	hypothetical protein LOC100273306	-	8e-7	At3g48750	CDC2 (CELL DIVISION CONTROL 2)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.7648.1.A1_at	CO517814	hypothetical protein LOC100191181	-	5e-7	At5g40160	EMB506 (embryo defective 506)	C.G.	S.X.	Please select
0.04	2e+0	32	Zm.4181.1.A1_at	AY107930.1	MPK7 - putative MAPK	-	2e-6	At2g18170	ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.217.1.S1_at	AB016801.1	MAP kinase 4	-	6e-2	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-3	44	Arabidopsis thaliana	At2g46070	819215	MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12)	Encodes a MAP kinase protein. MPK12 interacts with the IBR5 protein phosphatase in vitro and in vivo, and it can be dephosphorylated and inactivated by IBR5. MPK12 appears to be a negative regulator of auxin signlaing. MPK12 RNAi lines are hypersensitive to auxin in root elongation and transcriptional response assays, but they appear to have normal sensitivity to ABA. MPK12 is a nuclear protein and its kinase activity is increased following auxin treatment. MPK12 transcripts are widely expressed in seedlings, but MPK12 expression is stronger in guard cells than in other cell types in mature plants.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	3e-8	59	Glycine max	Gma.5072.1.A1_at	BI970769	-	-	1e-2	At1g07880	ATMPK13	C.G.	S.X.	Please select
0.09	6e-7	54	Hordeum vulgare	Contig6993_at	Contig6993	-	-	1e-19	At4g01370	ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4)	C.G.	S.X.	Please select
0.23	2e-68	260	Oryza sativa	Os08g0157000	9636.m00537	-	Mitogen-activated protein kinase 4	9e-13	At1g01560	ATMPK11	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-1	36	Populus trichocarpa	PtpAffx.208870.1.S1_s_at	pmrna17579	hypothetical protein	-	9e-7	At1g24620	polcalcin, putative / calcium-binding pollen allergen, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	34	Triticum aestivum	TaAffx.36636.1.A1_at	BJ323291	-	-	4e+0	At4g24240	WRKY7	C.G.	S.X.	Please select
0.06	6e-6	50	Vitis vinifera	1614595_at	CF512523	hypothetical protein LOC100251947	-	6e-6	At4g01370	ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage