Gene omics information

Query gene ID	Zm.5166.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	Zm.5166.1.S1_at	AI612220	-	-	1e+0	At2g19690	PLA2-BETA (PHOSPHOLIPASE A2-BETA)	S.X.	H.G.	Please select
0.46	58.4	Zm.11605.1.A1_at	BM379262	-	-	4e+0	At4g11930	unknown protein	S.X.	H.G.	Please select
0.43	52.8	Zm.14013.2.A1_x_at	BM338829	hypothetical protein LOC100193147 /// hypothetical protein LOC100275870 /// hypothetical protein LOC100276632 /// hypothetical protein LOC100278726	-	2e+1	At5g51860	MADS-box protein (AGL72)	S.X.	H.G.	Please select
0.42	51.3	Zm.6475.2.A1_a_at	CO531953	hypothetical protein LOC100273857 /// PHD finger protein	-	3e-21	At1g14510	AL7 (ALFIN-LIKE 7)	S.X.	H.G.	Please select
0.42	51.3	Zm.12236.1.A1_at	CA830514	hypothetical protein LOC100194199	-	5e+0	At3g13970	APG12B (AUTOPHAGY 12 B)	S.X.	H.G.	Please select
0.29	28.1	Zm.4385.1.S1_at	BQ487047	small nuclear ribonucleoprotein-associated protein B	-	3e-15	At5g44500	small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.0	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.2	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.5	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.6	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-3	42	Zm.9437.1.A1_at	BM268875	-	-	6e+0	At5g43540	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.19074.1.A1_at	CD446266	hypothetical protein LOC100216800	-	4e+0	At4g31200	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.8466.1.S1_at	BQ538688	macrophage migration inhibitory factor	-	4e-11	At5g01650	macrophage migration inhibitory factor family protein / MIF family protein	C.G.	S.X.	Please select
0.04	2e+0	32	Zm.7742.1.A1_at	AY107798.1	thiamin pyrophosphokinase 1	-	3e+0	At1g02880	TPK1 (THIAMIN PYROPHOSPHOKINASE1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.6411.1.A1_at	BE519338	Hypothetical protein LOC100193027	-	7e-3	At1g23900	GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5151.1.A1_at	AY172976.1	SET domain protein 123	-	4e-5	At5g06620	SDG38 (SET DOMAIN PROTEIN 38)	C.G.	S.X.	Please select
0.03	9e+0	30	ZmAffx.1098.1.A1_at	AW126565	triacylglycerol lipase	-	3e+0	At1g71260	ATWHY2 (A. THALIANA WHIRLY 2)	C.G.	S.X.	Please select
0.03	9e+0	30	ZmAffx.1098.1.S1_at	AW126565	-	-	3e+0	At1g71260	ATWHY2 (A. THALIANA WHIRLY 2)	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.9515.1.S1_at	AY433815.1	salt-induced MAP kinase 1	-	5e-24	At4g01370	ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At2g19690	816488	PLA2-BETA (PHOSPHOLIPASE A2-BETA)	One of four PLA2 genes in Arabidopsis. Involved in stomatal opening in response to light. Expressed in guard cells.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-3	44	Glycine max	GmaAffx.53996.2.S1_at	BF066536	-	-	1e-6	At1g02880	TPK1 (THIAMIN PYROPHOSPHOKINASE1)	C.G.	S.X.	Please select
0.37	1e-29	129	Hordeum vulgare	Contig15771_at	Contig15771	-	-	1e-1	At1g02880	TPK1 (THIAMIN PYROPHOSPHOKINASE1)	C.G.	S.X.	Please select
0.30	8e-96	351	Oryza sativa	Os01g0931400	AK064797.1	-	Thiamine pyrophosphokinase family protein	1e+0	At1g02880	TPK1 (THIAMIN PYROPHOSPHOKINASE1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Populus trichocarpa	PtpAffx.8382.2.A1_s_at	CV260492	hypothetical protein	-	3e-11	At1g54460	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.51	2e-27	123	Triticum aestivum	Ta.25388.1.A1_at	CD452581	-	-	2e+0	At2g10608	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1622287_at	CB982913	hypothetical protein LOC100245285	-	1e+0	At3g17160	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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