Gene omics information

Query gene ID	Zm.5158.1.S1_at
Gene name	hypothetical protein LOC100274429
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.5158.1.S1_at	AY106564.1	hypothetical protein LOC100274429	-	3e-6	At2g38560	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS)	S.X.	H.G.	Please select
0.80	94.0	Zm.9233.1.A1_at	BM348207	pollen allergen Phl p 2	-	5e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.1404.1.S1_at	40794996-79	-	-	1e-3	Atmg00690	-	S.X.	H.G.	Please select
0.63	81.1	ZmAffx.146.1.A1_at	AI667826	30S ribosomal protein S31	-	2e-1	At4g21450	vesicle-associated membrane family protein / VAMP family protein	S.X.	H.G.	Please select
0.61	79.5	ZmAffx.1535.1.S1_at	40794996-15	-	-	0	Atmg01275	-	S.X.	H.G.	Please select
0.40	48.5	ZmAffx.1347.1.S1_s_at	40794996-41	-	-	2e+0	At3g18050	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	97.3	GSM205421	B73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.5	96.3	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
3.9	95.7	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.7	95.4	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.7	95.4	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.5	95.1	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.4	94.9	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
3.3	94.7	GSM205423	B73xMo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.3	94.7	GSM205425	B73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.0	94.0	GSM205433	B73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	0	1108	Zm.6495.1.A1_at	BG841953	-	-	1e-2	At2g38560	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS)	C.G.	S.X.	Please select
0.73	0	1108	Zm.6495.1.S1_at	AY105321.1	transcription elongation factor A protein 2	-	1e-2	At2g38560	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.5550.1.S1_at	AI622648	hypothetical protein LOC100280363	-	2e-7	At3g60600	VAP (VESICLE ASSOCIATED PROTEIN)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.18548.1.A1_at	BI396289	hypothetical protein LOC100216883	-	2e-6	At2g47630	esterase/lipase/thioesterase family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.15800.3.S1_at	CK370046	-	-	4e-13	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.13065.1.A1_at	CD437453	sarcosine oxidase	-	5e-5	At2g24580	sarcosine oxidase family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.11736.1.A1_at	AI622611	hypothetical protein LOC100279500	-	3e-1	At3g28320	-	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.6489.1.A1_at	AI692084	-	-	7e-7	At5g58787	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.4868.1.S1_at	AY105012.1	SWIb domain-containing protein	-	7e+0	At1g47410	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	3e-6	54	Arabidopsis thaliana	At2g38560	818438	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS)	Encodes RNA polymerase II transcript elongation factor TFIIS. Complements yeast TFIIS mutation. Mutant plants display essentially normal development, but they flower slightly earlier than the wild type and show clearly reduced seed dormancy.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-4	48	Glycine max	Gma.7803.1.S1_at	BE658932	-	-	1e-1	At5g14750	ATMYB66 (MYB DOMAIN PROTEIN 66)	C.G.	S.X.	Please select
0.40	4e-38	159	Hordeum vulgare	Contig7641_at	Contig7641	-	-	1e-11	At2g38560	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS)	C.G.	S.X.	Please select
0.59	4e-155	549	Oryza sativa	Os03g0815900	AK119756.1	-	-	9e-10	At2g38560	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	9e-17	89	Populus trichocarpa	PtpAffx.22305.1.S1_at	BP930994	hypothetical protein	-	2e-25	At2g38560	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	2e-26	121	Triticum aestivum	Ta.29798.1.S1_s_at	CD900139	-	-	9e-7	At2g38560	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS)	C.G.	S.X.	Please select
0.09	3e-28	125	Vitis vinifera	1607085_at	CF515982	hypothetical protein LOC100263760	-	2e-10	At2g38560	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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