Gene omics information

Query gene ID	Zm.5147.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.5147.1.A1_at	CK787170	-	-	2e-25	At5g36290	unknown protein	S.X.	H.G.	Please select
0.91	99.0	Zm.18145.1.S1_at	BU079975	-	-	1e+1	At5g46890	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.83	95.6	Zm.5741.2.A1_at	BM074874	Hypothetical protein LOC100191775	-	4e+0	At5g46940	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.278.1.S1_at	AI670406	-	-	8e-1	At1g73875	endonuclease/exonuclease/phosphatase family protein	S.X.	H.G.	Please select
0.61	79.5	Zm.11764.1.A1_at	AY109047.1	GIR1 /// GIR1	-	1e+0	At5g62210	embryo-specific protein-related	S.X.	H.G.	Please select
0.50	65.7	Zm.5052.1.A1_at	CK145364	hypothetical protein LOC100279399	-	6e+0	At5g24313	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.1	95.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM206330	Lower pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.0	94.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.0	94.0	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.0	94.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-1	36	Zm.2082.1.A1_at	CO521262	hypothetical protein LOC100279862	-	2e-5	At2g41500	EMB2776	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.17683.1.S1_at	CK370020	-	-	3e-1	At1g58170	disease resistance-responsive protein-related / dirigent protein-related	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.16590.4.A1_at	CF628677	-	-	1e-3	At1g14170	KH domain-containing protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.16907.2.S1_at	CK371534	-	-	1e+0	At5g44130	FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.13029.1.A1_at	CA400580	-	-	2e+0	At4g32840	PFK6 (PHOSPHOFRUCTOKINASE 6)	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.9764.1.A1_at	CO526069	-	-	8e-1	At5g19790	RAP2.11 (related to AP2 11)	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.90.1.A1_a_at	AF004210.1	-	-	4e+0	At5g26070	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	5e+0	32	Zm.8060.1.A1_at	BQ538589	nodulin protein	-	2e-1	At3g13857	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.7709.1.A1_at	BM269078	hypothetical protein LOC100280092	-	5e-1	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	2e-25	117	Arabidopsis thaliana	At5g36290	833627	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;BMOPFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.25	5e-21	103	Glycine max	Gma.10004.1.S1_at	BF070937	-	-	6e-25	At5g36290	unknown protein	C.G.	S.X.	Please select
0.27	3e-26	119	Hordeum vulgare	Contig14363_at	Contig14363	-	-	4e-8	At5g36290	unknown protein	C.G.	S.X.	Please select
0.47	7e-166	585	Oryza sativa	Os11g0472500	AK073686.1	-	Protein of unknown function UPF0016 family protein	5e-17	At5g36290	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.24	2e-26	121	Populus trichocarpa	PtpAffx.6482.1.S1_at	CV260043	predicted membrane protein	-	4e-82	At5g36290	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	9e-25	115	Triticum aestivum	Ta.9324.2.S1_a_at	CA659465	-	-	4e-4	At5g36290	unknown protein	C.G.	S.X.	Please select
0.20	5e-36	151	Vitis vinifera	1611691_s_at	CB980403	hypothetical protein LOC100265089	-	6e-59	At5g36290	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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