CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.5139.1.S1_at

Gene name 40S ribosomal protein SA

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 77.8 Zm.5139.1.S1_at AI622756 40S ribosomal protein SA - 8e-19 At3g04770 RPSAb (40S ribosomal protein SA B) S.X. H.G.
0.53 69.1 Zm.5656.1.A1_at BG837879 PAS2 - 2e-13 At5g10480 PAS2 (PASTICCINO 2) S.X. H.G.
0.50 65.7 Zm.2157.8.S1_at BI096578 Hypothetical protein LOC100193584 - 8e-1 At3g66654 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein S.X. H.G.
0.50 65.7 Zm.5305.1.A1_at CK370425 ribonucleoprotein A - 6e-4 At2g37220 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative S.X. H.G.
0.44 55.7 Zm.7598.1.A1_at CF629653 - - 3e-3 At2g40510 40S ribosomal protein S26 (RPS26A) S.X. H.G.
0.42 51.3 Zm.155.2.S1_at AY109498.1 - - 4e-3 At4g32400 SHS1 (SODIUM HYPERSENSITIVE 1) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.3 98.2 GSM205369 Mo17 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
8.4 98.1 GSM205373 Mo17 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
8.0 98.0 GSM205371 Mo17xB73 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.9 97.9 GSM205375 Mo17xB73 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
6.9 97.7 GSM205365 Mo17 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
6.7 97.6 GSM205370 B73 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
6.5 97.5 GSM205374 B73 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
6.1 97.4 GSM205367 Mo17xB73 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.7 97.2 GSM205376 B73xMo17 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.6 97.1 GSM205372 B73xMo17 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 3e-112 404 Zm.16537.2.A1_at CD437670 - - 2e-35 At3g04770 RPSAb (40S ribosomal protein SA B) C.G. S.X.
0.38 2e-107 389 Zm.16537.1.S1_at AY103617.1 40S ribosomal protein SA - 4e-70 At1g72370 P40 C.G. S.X.
0.39 2e-106 385 Zm.16537.3.S1_a_at CA404068 hypothetical protein LOC100273170 - 2e-22 At3g04770 RPSAb (40S ribosomal protein SA B) C.G. S.X.
0.39 2e-106 385 Zm.16537.3.S1_at CA404068 hypothetical protein LOC100273170 - 2e-22 At3g04770 RPSAb (40S ribosomal protein SA B) C.G. S.X.
0.01 3e-1 36 Zm.5916.1.A1_at AI665472 hypothetical protein LOC100216993 - 8e-1 At5g57887 unknown protein C.G. S.X.
0.01 3e-1 36 Zm.17093.1.S1_at CO523236 hypothetical protein LOC100193332 - 5e-2 At2g27260 - C.G. S.X.
0.02 1e+0 34 Zm.8548.1.A1_at BM339575 hypothetical protein LOC100279117 - 2e+0 At2g36680 - C.G. S.X.
0.01 1e+0 34 Zm.5926.1.S1_at AY104624.1 - - 1e-8 At4g16070 lipase class 3 family protein C.G. S.X.
0.02 1e+0 34 Zm.5802.1.A1_at AI649723 hypothetical protein LOC100193125 - 2e+0 At4g31450 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 8e-19 95 Arabidopsis thaliana At3g04770 819637 RPSAb (40S ribosomal protein SA B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane;BMOAFP - - - C.G. S.X.
0.44 1e-70 268 Glycine max GmaAffx.92132.1.S1_s_at CF807857 - - 6e-55 At3g04770 RPSAb (40S ribosomal protein SA B) C.G. S.X.
0.48 0 722 Hordeum vulgare Contig1919_at Contig1919 - - 2e-78 At1g72370 P40 C.G. S.X.
0.56 0 789 Oryza sativa Os07g0616600 AK102735.1 - 40S ribosomal protein SA (p40) (Laminin receptorhomolog) 4e-64 At3g04770 RPSAb (40S ribosomal protein SA B) C.G. S.X.
0.33 7e-54 212 Populus trichocarpa Ptp.5310.1.S1_s_at CF118960 hypothetical protein - 4e-63 At3g04770 RPSAb (40S ribosomal protein SA B) C.G. S.X.
0.42 0 668 Triticum aestivum Ta.24129.1.S1_at CK209220 - - 4e-55 At3g04770 RPSAb (40S ribosomal protein SA B) C.G. S.X.
0.36 1e-91 335 Vitis vinifera 1621771_at CB348522 40S ribosomal protein SA - 1e-110 At1g72370 P40 C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage