Gene omics information

Query gene ID	Zm.5101.1.S1_at
Gene name	hypothetical protein LOC100193724
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.5101.1.S1_at	AY110556.1	hypothetical protein LOC100193724	-	1e-3	At3g01300	protein kinase, putative	S.X.	H.G.	Please select
0.77	92.1	Zm.18405.1.A1_at	CO521227	hypothetical protein LOC100193248	-	3e+0	At5g01881	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.10135.1.A1_at	BM381166	-	-	1e+0	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	S.X.	H.G.	Please select
0.50	65.7	Zm.11621.2.A1_x_at	CK394745	diphthamide biosynthesis protein 3	-	2e-2	At2g15910	CSL zinc finger domain-containing protein	S.X.	H.G.	Please select
0.50	65.7	Zm.2076.2.A1_at	CF634644	hypothetical protein LOC100194265	-	2e-3	At3g04230	40S ribosomal protein S16 (RPS16B)	S.X.	H.G.	Please select
0.48	61.3	Zm.18281.1.S1_at	BG840860	hypothetical protein LOC100277869	-	5e-1	At1g56530	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
39.1	99.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.1	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.8	99.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.4	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.1	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.4	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.77	0	958	Zm.5101.1.A1_at	AW400041	Hypothetical protein LOC100193724	-	1e-3	At3g01300	protein kinase, putative	C.G.	S.X.	Please select
0.03	2e-4	46	Zm.12080.1.A1_at	BM348988	protein kinase APK1A	-	1e-18	At2g28930	APK1B	C.G.	S.X.	Please select
0.04	6e-4	44	Zm.4078.1.A1_at	BM079694	protein kinase APK1A	-	6e-16	At3g01300	protein kinase, putative	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.13112.1.A1_at	AY110231.1	-	-	3e-10	At5g63420	emb2746 (embryo defective 2746)	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.13112.1.S1_at	AY110231.1	-	-	3e-10	At5g63420	emb2746 (embryo defective 2746)	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.3439.1.A1_at	CF048515	hypothetical protein LOC100272944	-	3e-6	At1g60030	xanthine/uracil permease family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.91.1.S1_at	AY111773.1	hypothetical protein LOC100192631	-	4e+0	At4g23895	pleckstrin homology (PH) domain-containing protein-related	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.7056.1.A1_a_at	BM349105	60S ribosomal protein L5-1	-	1e-39	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.12301.1.S1_at	BM381154	hypothetical protein LOC100193414	-	5e-8	At2g37340	RSZ33	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-3	44	Arabidopsis thaliana	At3g01300	820989	protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	1e-4	48	Glycine max	GmaAffx.8472.1.S1_at	AW350979	-	-	2e-40	At3g01300	protein kinase, putative	C.G.	S.X.	Please select
0.05	2e-1	36	Hordeum vulgare	Contig8990_at	Contig8990	-	-	3e-10	At2g02800	APK2B (PROTEIN KINASE 2B)	C.G.	S.X.	Please select
0.17	5e-57	222	Oryza sativa	Os06g0168800	AK111753.1	-	Protein kinase	3e-22	At5g15080	protein kinase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	9e-21	101	Populus trichocarpa	Ptp.5398.1.S1_a_at	CV233325	-	-	2e-19	At5g15080	protein kinase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	6e-12	71	Triticum aestivum	Ta.12685.1.S1_at	CA722001	-	-	1e-1	At2g28930	APK1B	C.G.	S.X.	Please select
0.04	3e-2	38	Vitis vinifera	1616357_at	CF516994	hypothetical protein LOC100255530	-	5e-16	At2g17220	protein kinase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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