Gene omics information

Query gene ID	Zm.5093.1.A1_at
Gene name	GAGA-binding protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.5093.1.A1_at	AI600800	GAGA-binding protein	-	4e-4	At1g14685	BPC2 (BASIC PENTACYSTEINE 2)	S.X.	H.G.	Please select
0.71	88.2	Zm.18133.1.A1_at	AY103981.1	-	-	8e-38	At1g78570	RHM1 (RHAMNOSE BIOSYNTHESIS 1)	S.X.	H.G.	Please select
0.65	82.1	ZmAffx.772.1.S1_at	AI746167	-	-	3e+0	At1g30840	ATPUP4	S.X.	H.G.	Please select
0.62	79.8	Zm.18125.1.S1_at	CN844337	-	-	4e-1	At3g47380	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.59	76.1	Zm.10538.1.A1_at	BQ538177	-	-	6e-7	At3g59830	ankyrin protein kinase, putative	S.X.	H.G.	Please select
0.55	71.6	Zm.5180.1.A1_at	AI612313	-	-	1e+1	At5g27090	AGL54	S.X.	H.G.	Please select
0.51	66.4	Zm.7858.1.A1_at	AY108500.1	-	-	3e-3	At1g70940	PIN3 (PIN-FORMED 3)	S.X.	H.G.	Please select
0.51	66.4	Zm.17660.1.S1_at	AY106360.1	-	-	4e-1	At4g39720	VQ motif-containing protein	S.X.	H.G.	Please select
0.50	65.7	Zm.18374.1.A1_at	CO521737	hypothetical protein LOC100191144	-	1e-1	At1g21890	nodulin MtN21 family protein	S.X.	H.G.	Please select
0.47	59.9	Zm.2997.1.S1_at	CD983066	REX1 DNA Repair family protein	-	6e+0	At5g35525	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.6	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.1	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.72	4e-175	613	Zm.13018.1.A1_at	CA403376	GAGA-binding protein	-	2e-3	At2g01930	BPC1 (BASIC PENTACYSTEINE1)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.17678.1.S1_at	CK368965	hypothetical protein LOC100216586	-	3e-12	At5g14470	GHMP kinase-related	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.17577.1.S1_a_at	AY108847.1	gibberellin-regulated protein 2	-	7e-3	At2g27250	CLV3 (CLAVATA3)	C.G.	S.X.	Please select
0.03	7e-1	34	ZmAffx.634.1.A1_at	AI715062	-	-	3e+0	At5g40981	unknown protein	C.G.	S.X.	Please select
0.03	7e-1	34	ZmAffx.634.1.S1_at	AI715062	-	-	3e+0	At5g40981	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.19237.1.A1_at	CA402877	hypothetical protein LOC100216898	-	2e-1	At3g49010	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)	C.G.	S.X.	Please select
0.03	7e-1	34	Zm.18481.1.A1_at	CO525607	-	-	2e+1	At5g55570	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	ZmAffx.1525.1.S1_at	40794996-122	-	-	2e+0	At3g30160	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.5618.1.S1_at	CK827366	ran-binding protein 1	-	7e-10	At5g58590	RANBP1 (RAN BINDING PROTEIN 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	4e-4	46	Arabidopsis thaliana	At1g14685	838031	BPC2 (BASIC PENTACYSTEINE 2)	Arabidopsis GBP Basic Penta Cysteine 1	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	2e-3	44	Glycine max	Gma.1732.1.S1_at	BM891256	-	-	3e-22	At1g68120	BPC3 (BASIC PENTACYSTEINE 3)	C.G.	S.X.	Please select
0.03	3e-3	42	Hordeum vulgare	Contig22509_at	Contig22509	-	-	3e-1	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	C.G.	S.X.	Please select
0.23	5e-42	173	Oryza sativa	Os10g0114500	AY569035.1	-	Barley B recombinant like-protein B (Barley Brecombinant like-protein A)	8e-4	At1g14685	BPC2 (BASIC PENTACYSTEINE 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	1e-7	57	Populus trichocarpa	PtpAffx.2043.1.S1_a_at	CV243667	hypothetical protein	-	1e-17	At2g01930	BPC1 (BASIC PENTACYSTEINE1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.41	2e-92	339	Triticum aestivum	Ta.3086.1.A1_at	BJ215774	-	-	2e-5	At1g14685	BPC2 (BASIC PENTACYSTEINE 2)	C.G.	S.X.	Please select
0.08	2e-6	52	Vitis vinifera	1613483_at	CF513351	hypothetical protein LOC100255909	-	2e-5	At1g14685	BPC2 (BASIC PENTACYSTEINE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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