Gene omics information

Query gene ID	Zm.5077.1.A1_at
Gene name	hypothetical protein LOC100217191
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	76.1	Zm.5077.1.A1_at	AY106102.1	hypothetical protein LOC100217191	-	5e-2	At3g28070	nodulin MtN21 family protein	S.X.	H.G.	Please select
0.48	61.3	Zm.8997.1.A1_at	AY106532.1	hypothetical protein LOC100272754	-	2e-9	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	S.X.	H.G.	Please select
0.47	59.9	Zm.17768.1.A1_at	CK371588	-	-	3e+0	At4g30845	unknown protein	S.X.	H.G.	Please select
0.41	49.7	Zm.7768.1.A1_at	BG836144	-	-	4e-3	At5g23950	C2 domain-containing protein	S.X.	H.G.	Please select
0.39	45.6	Zm.1842.1.A1_at	BM074396	hypothetical protein LOC100193349	-	1e-1	At5g23680	sterile alpha motif (SAM) domain-containing protein	S.X.	H.G.	Please select
0.35	38.9	Zm.5962.2.A1_at	CO532622	hypothetical protein LOC100192869	-	2e-31	At5g51570	band 7 family protein	S.X.	H.G.	Please select
0.28	28.1	Zm.18114.1.A1_at	CN844639	-	-	4e-48	At2g37620	ACT1 (ACTIN 1)	S.X.	H.G.	Please select
0.28	28.1	Zm.17766.1.S1_at	CK371550	-	-	3e+0	At5g14730	unknown protein	S.X.	H.G.	Please select
0.22	16.9	Zm.17765.1.S1_at	CK371533	-	-	1e+0	At2g25280	-	S.X.	H.G.	Please select
0.22	16.9	Zm.5680.1.A1_at	CF629045	monocopper oxidase	-	4e+0	At5g58780	dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.2	98.5	GSM206312	Upper pulvinus 2 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.6	98.4	GSM206288	Upper pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.3	98.4	GSM206318	Lower pulvinus 2 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.2	98.4	GSM206295	Lower pulvinus 5 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.1	98.2	GSM206294	Lower pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.8	97.9	GSM206317	Right pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.4	97.8	GSM206319	Lower pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.9	97.7	GSM206289	Upper pulvinus 5 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.8	97.6	GSM206311	Left pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.8	97.6	GSM206313	Upper pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.92	0	753	Zm.5077.1.A1_x_at	AY106102.1	hypothetical protein LOC100217191	-	5e-2	At3g28070	nodulin MtN21 family protein	C.G.	S.X.	Please select
0.92	0	753	Zm.5077.1.A1_s_at	AY106102.1	hypothetical protein LOC100217191	-	5e-2	At3g28070	nodulin MtN21 family protein	C.G.	S.X.	Please select
0.45	5e-170	595	Zm.2245.2.A1_at	CF634375	hypothetical protein LOC100217191	-	2e-1	At3g28070	nodulin MtN21 family protein	C.G.	S.X.	Please select
0.03	4e-1	34	Zm.17961.1.A1_at	CK826694	-	-	1e-4	At1g79050	DNA repair protein recA	C.G.	S.X.	Please select
0.02	4e-1	34	Zm.12735.1.A1_at	AI491263	hypothetical protein LOC100274318	-	6e-14	At5g19760	dicarboxylate/tricarboxylate carrier (DTC)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.6593.1.S1_at	CO527833	-	-	4e-3	At4g22890	PGR5-LIKE A	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.4487.1.A1_at	AI734409	SAM-dependent methyltransferase	-	2e+0	At3g53235	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.3847.1.S1_at	AY112527.1	-	-	3e-13	At3g04240	SEC (secret agent)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.300.1.A1_at	AY107888.1	polyamine oxidase1	-	1e+1	At5g15600	SP1L4 (SPIRAL1-LIKE4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-2	38	Arabidopsis thaliana	At3g28070	822431	nodulin MtN21 family protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;PBOAMF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e+0	32	Glycine max	PsAffx.psHB030xI10f_at	PsAffx.psHB030xI10f	-	-	6e-1	At3g51440	strictosidine synthase family protein	C.G.	S.X.	Please select
0.14	1e-7	56	Hordeum vulgare	Contig8113_s_at	Contig8113	-	-	4e-1	At5g49400	zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please select
0.13	8e-12	71	Oryza sativa	Os11g0199600	AK101774.1	-	Zn-finger, CCHC type domain containing protein	7e-1	At5g61890	AP2 domain-containing transcription factor family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	5e-3	42	Populus trichocarpa	PtpAffx.207954.1.S1_s_at	pmrna15785	hypothetical protein	-	9e-19	At5g49400	zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	4e-3	42	Triticum aestivum	Ta.28102.1.A1_at	BQ172004	-	-	3e-1	At5g49400	zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please select
0.07	6e-2	36	Vitis vinifera	1609110_at	CF403304	hypothetical protein LOC100258605	-	2e-1	At3g28230	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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