CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.5074.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 85.8 Zm.5074.1.A1_at AI600716 - - 5e-14 At3g62600 ATERDJ3B S.X. H.G.
0.77 92.1 Zm.17781.1.A1_at CK370654 - - 1e+1 At1g69530 ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) S.X. H.G.
0.75 90.8 Zm.94.1.S1_at X79934.1 Dof2 - 1e-7 At2g28810 Dof-type zinc finger domain-containing protein S.X. H.G.
0.73 89.9 Zm.11672.1.A1_at BM379851 - - 5e+0 At5g36910 THI2.2 (THIONIN 2.2) S.X. H.G.
0.60 77.8 - - - 0 S.X. H.G.
0.59 76.1 Zm.4833.1.A1_at CF003111 hypothetical protein LOC100272303 - 2e-12 At5g57815 cytochrome c oxidase subunit 6b, putative S.X. H.G.
0.57 75.1 Zm.5890.1.A1_at AI664901 - - 3e+0 At1g24010 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.5 97.5 GSM205431 Mo17 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.7 96.5 GSM205427 Mo17xB73 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.5 96.3 GSM205424 Mo17 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.5 96.3 GSM253246 ZM_12h_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
4.3 96.1 GSM205434 Mo17xB73 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.0 95.8 GSM205373 Mo17 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.9 95.7 GSM205365 Mo17 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.3 94.7 GSM205376 B73xMo17 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.2 94.5 GSM205420 Mo17 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.0 94.0 GSM205375 Mo17xB73 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-4 46 Zm.67.1.S1_at AY104025.1 Actin-depolymerizing factor - 3e-5 At4g25590 ADF7 (actin depolymerizing factor 7) C.G. S.X.
0.02 3e-4 46 Zm.16036.1.S1_at CF010440 actin depolymerizing factor - 1e-7 At5g52360 ADF10 (ACTIN DEPOLYMERIZING FACTOR 10) C.G. S.X.
0.02 7e-2 38 Zm.6892.1.A1_at AY108160.1 hypothetical protein LOC100216704 - 7e-20 At5g22060 ATJ2 C.G. S.X.
0.02 3e-1 36 Zm.18074.1.A1_at CO521107 - - 4e-4 At3g50980 XERO1 (DEHYDRIN XERO 1) C.G. S.X.
0.01 3e-1 36 Zm.17836.1.A1_at CK370651 60S ribosomal protein L31 - 4e-22 At5g56710 60S ribosomal protein L31 (RPL31C) C.G. S.X.
0.01 3e-1 36 Zm.17836.1.A1_x_at CK370651 60S ribosomal protein L31 - 4e-22 At5g56710 60S ribosomal protein L31 (RPL31C) C.G. S.X.
0.02 3e-1 36 Zm.15881.1.A1_x_at BM379962 - - 8e-1 At5g56710 60S ribosomal protein L31 (RPL31C) C.G. S.X.
0.02 3e-1 36 Zm.13938.2.S1_at CK368471 - - 4e-23 At2g19740 60S ribosomal protein L31 (RPL31A) C.G. S.X.
0.01 3e-1 36 Zm.13736.1.A1_at CF007017 - - 1e-8 At1g10170 ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 5e-14 79 Arabidopsis thaliana At3g62600 825434 ATERDJ3B J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast. - - - C.G. S.X.
0.18 4e-15 83 Glycine max Gma.2546.1.S1_at CA783454 - - 6e-35 At3g62600 ATERDJ3B C.G. S.X.
0.61 0 634 Hordeum vulgare Contig7280_at Contig7280 - - 3e-12 At3g62600 ATERDJ3B C.G. S.X.
0.56 1e-176 621 Oryza sativa Os05g0156500 AK062718.1 - Apobec-1 binding protein 2 2e-10 At3g62600 ATERDJ3B C.G. S.X.
0.26 4e-15 83 Populus trichocarpa PtpAffx.80014.1.S1_at CV264509 hypothetical protein - 1e-24 At3g62600 ATERDJ3B C.G. S.X.
0.56 6e-168 591 Triticum aestivum Ta.8128.1.S1_x_at BQ161382 - - 4e-12 At3g62600 ATERDJ3B C.G. S.X.
0.17 3e-34 145 Vitis vinifera 1620520_s_at BQ797142 hypothetical protein LOC100252105 - 2e-23 At3g62600 ATERDJ3B C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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