Gene omics information

Query gene ID	Zm.5053.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.5053.1.A1_at	CO533193	-	-	2e-7	At5g66850	MAPKKK5	S.X.	H.G.	Please select
0.38	44.2	Zm.1411.1.S1_at	AW563065	-	-	7e-2	At1g17330	metal-dependent phosphohydrolase HD domain-containing protein-related	S.X.	H.G.	Please select
0.38	44.2	Zm.18116.1.S1_at	CN844693	SNF1-related protein kinase regulatory subunit beta-1	-	4e-1	At4g24930	thylakoid lumenal 17.9 kDa protein, chloroplast	S.X.	H.G.	Please select
0.36	41.3	Zm.14057.2.S1_x_at	AF457961.1	-	-	8e-20	At4g22910	FZR2 (FIZZY-RELATED 2)	S.X.	H.G.	Please select
0.35	38.9	Zm.16853.1.A1_at	AY103985.1	-	-	2e-18	At5g05920	DHS (DEOXYHYPUSINE SYNTHASE)	S.X.	H.G.	Please select
0.33	36.0	Zm.4985.1.A1_at	CO533545	ubiquitin-conjugating enzyme E2-17 kDa	-	2e-25	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.2	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-5	50	Zm.9503.1.A1_at	BM269403	hypothetical protein LOC100191795	-	2e-3	At1g63700	YDA (YODA)	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.5107.1.A1_at	BM266614	hypothetical protein LOC100191147	-	1e-1	At4g17280	-	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.7399.1.S1_at	AY106106.1	hypothetical protein LOC100274088	-	1e-79	At3g07980	MAPKKK6	C.G.	S.X.	Please select
0.02	2e+0	34	Zm.7691.1.A1_at	BM078399	hypothetical protein LOC100273759	-	2e-2	At3g08730	PK1 (PROTEIN-SERINE KINASE 1)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.17459.1.A1_at	AY110122.1	Hypothetical protein LOC100191291	-	1e-20	At4g32830	AtAUR1 (ATAURORA1)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.17459.1.S1_at	AY110122.1	-	-	1e-20	At4g32830	AtAUR1 (ATAURORA1)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.1609.1.S1_at	AJ430205.1	transcriptional adaptor	-	2e-5	At4g16420	ADA2B (HOMOLOG OF YEAST ADA2 2B)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.15487.1.S1_at	CD219309	MPK17-1 - putative MAPK	-	2e-51	At3g18040	MPK9 (MAP KINASE 9)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.14380.1.A1_at	CN071495	-	-	2e-34	At5g13630	GUN5 (GENOMES UNCOUPLED 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-7	57	Arabidopsis thaliana	At5g66850	836819	MAPKKK5	member of MEKK subfamily	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	5e-6	54	Glycine max	GmaAffx.92784.1.S1_at	CF808509	-	-	3e-2	At5g66850	MAPKKK5	C.G.	S.X.	Please select
0.13	5e-7	56	Hordeum vulgare	Contig17029_at	Contig17029	-	-	5e+0	At3g61827	unknown protein	C.G.	S.X.	Please select
0.41	0	755	Oryza sativa	Os03g0764300	AK068541.1	-	Protein kinase domain containing protein	2e-9	At5g66850	MAPKKK5	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	6e-15	83	Populus trichocarpa	PtpAffx.207284.1.S1_at	pmrna14452	hypothetical protein	-	1e-87	At5g66850	MAPKKK5	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	6e-8	59	Triticum aestivum	Ta.13264.1.A1_at	BQ167003	-	-	3e-1	At4g29033	-	C.G.	S.X.	Please select
0.02	3e-4	46	Vitis vinifera	1617387_at	BQ793951	-	-	3e-15	At4g08500	MEKK1 (MAP KINASE KINASE KINASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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