Gene omics information

Query gene ID	Zm.5012.1.A1_at
Gene name	auxin response factor 75
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.5012.1.A1_at	CK849978	auxin response factor 75	-	9e-1	At3g45050	unknown protein	S.X.	H.G.	Please select
0.55	71.6	ZmAffx.122.1.A1_at	AI665696	hypothetical protein LOC100217096	-	8e-1	At1g23260	MMZ1 (MMS ZWEI HOMOLOGUE 1)	S.X.	H.G.	Please select
0.33	36.0	Zm.15215.1.A1_at	BM332652	Hypothetical protein LOC100193843	-	1e+0	At5g22870	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	S.X.	H.G.	Please select
0.33	36.0	Zm.3714.1.A1_at	BQ779267	eukaryotic translation initiation factor 3 subunit 3	-	2e-32	At1g10840	TIF3H1	S.X.	H.G.	Please select
0.33	36.0	Zm.18992.1.A1_at	CO521210	-	-	4e-1	At5g20370	serine-rich protein-related	S.X.	H.G.	Please select
0.27	24.6	Zm.14429.4.A1_at	CK827265	RALF	-	6e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.0	99.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.2	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.0	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.9	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-2	40	Zm.8052.1.S1_at	CK827803	-	-	2e-2	At5g58490	cinnamoyl-CoA reductase family	C.G.	S.X.	Please select
0.04	3e-2	40	Zm.5862.1.A1_at	BM333410	50S ribosomal protein L18	-	5e-4	At1g48350	ribosomal protein L18 family protein	C.G.	S.X.	Please select
0.02	1e-1	38	Zm.13082.1.S1_at	CD438478	-	-	1e-1	At3g49800	BSD domain-containing protein	C.G.	S.X.	Please select
0.02	1e-1	38	Zm.13082.1.S1_a_at	CD438478	-	-	1e-1	At3g49800	BSD domain-containing protein	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.5686.1.A1_at	AI629946	-	-	1e+0	At2g17380	AP19	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.5141.1.A1_at	CF628146	-	-	2e-60	At1g69960	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.7780.1.A1_at	CD433445	hypothetical protein LOC100274595	-	1e-7	At4g19230	CYP707A1	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.7780.1.S1_at	CD433445	-	-	1e-7	At4g19230	CYP707A1	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.7058.3.S1_a_at	AY103767.1	hypothetical protein LOC100217200 /// ypt homolog2	-	4e-76	At5g47200	ATRAB1A	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e-1	36	Arabidopsis thaliana	At3g45050	823640	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	GmaAffx.20763.1.S1_s_at	AW100360	-	-	3e+0	At2g33370	60S ribosomal protein L23 (RPL23B)	C.G.	S.X.	Please select
0.46	6e-62	238	Hordeum vulgare	Contig16346_at	Contig16346	-	-	5e-1	At3g45050	unknown protein	C.G.	S.X.	Please select
0.51	2e-83	311	Oryza sativa	Os03g0345100	AK065579.1	-	Rad9 family protein	3e-3	At1g67195	MIR414 (MICRORNA 414)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	5e+0	34	Populus trichocarpa	PtpAffx.201939.1.S1_s_at	pmrna3866	hypothetical protein	-	2e-1	At5g14440	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	1e+0	36	Triticum aestivum	TaAffx.108538.1.S1_at	CA697789	-	-	1e+0	At2g35710	glycogenin glucosyltransferase (glycogenin)-related	C.G.	S.X.	Please select
0.02	4e+0	32	Vitis vinifera	1616748_at	CF215206	hypothetical protein LOC100246856	-	2e-37	At3g49470	NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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