Gene omics information

Query gene ID	Zm.4988.1.A1_at
Gene name	Hypothetical protein LOC100193664
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.4988.1.A1_at	AY111117.1	Hypothetical protein LOC100193664	-	2e+0	At5g20900	JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)	S.X.	H.G.	Please select
0.67	85.8	Zm.4586.1.A1_at	AW499317	-	-	4e-2	At2g06420	unknown protein	S.X.	H.G.	Please select
0.61	79.5	Zm.7293.1.S1_at	BI675120	-	-	6e+0	At3g10920	MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)	S.X.	H.G.	Please select
0.61	79.5	Zm.9803.1.A1_at	BM339320	-	-	1e+0	At1g64740	TUA1 (ALPHA-1 TUBULIN)	S.X.	H.G.	Please select
0.50	65.7	Zm.14498.2.A1_at	AI691791	-	-	2e-4	At1g26770	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	S.X.	H.G.	Please select
0.44	55.7	Zm.14435.1.S1_at	AY109360.1	60S ribosomal protein L22-2	-	3e-35	At3g05560	60S ribosomal protein L22-2 (RPL22B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.5	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM253250	ZM_24h_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	2e-44	178	Zm.8100.1.A1_at	AY107723.1	hypothetical protein LOC100192082	-	4e-2	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	C.G.	S.X.	Please select
0.01	1e-2	40	Zm.5655.1.A1_at	CO532954	hypothetical protein LOC100272896	-	1e-8	At2g14910	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.6688.1.A1_at	BQ538665	hypothetical protein LOC100275476	-	3e+0	At1g68862	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.2641.1.A1_at	AW066658	hypothetical protein LOC100193303	-	1e-1	At2g47750	GH3.9 (PUTATIVE INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.9)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.2361.1.A1_at	BM381388	hypothetical protein LOC100191552	-	3e-17	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.13728.2.S1_at	AY106266.1	-	-	1e-14	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.13728.2.S1_a_at	AY106266.1	alpha-expansin 4	-	1e-14	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.9846.1.A1_at	BM340911	-	-	8e-2	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.8729.1.A1_at	BM339706	hypothetical protein LOC100277693	-	2e-2	At3g42310	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g20900	832214	JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e-1	36	Glycine max	GmaAffx.76886.1.S1_at	BE024029	-	-	2e-2	At1g27595	-	C.G.	S.X.	Please select
0.26	6e-61	234	Hordeum vulgare	Contig11814_at	Contig11814	-	-	2e+0	At5g44300	dormancy/auxin associated family protein	C.G.	S.X.	Please select
0.30	2e-82	307	Oryza sativa	Os03g0852500	AK068948.1	-	Conserved hypothetical protein	1e-1	At4g29240	leucine-rich repeat family protein / extensin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-2	40	Populus trichocarpa	PtpAffx.58971.1.S1_at	CV252610	hypothetical protein	-	4e-7	At1g73940	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	4e-119	428	Triticum aestivum	Ta.17749.1.S1_at	CA624023	-	-	1e+0	At5g20900	JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)	C.G.	S.X.	Please select
0.03	6e-1	34	Vitis vinifera	1610697_at	CF373671	-	-	1e+0	At5g57640	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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