Gene omics information

Query gene ID	Zm.4929.2.A1_a_at
Gene name	hypothetical protein LOC100192571
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	81.7	Zm.4929.2.A1_a_at	AI586452	hypothetical protein LOC100192571	-	3e+0	At5g28620	protein kinase C-related	S.X.	H.G.	Please select
0.55	71.6	Zm.12150.2.S1_at	AI619383	hypothetical protein LOC100273319	-	9e-1	At4g31340	myosin heavy chain-related	S.X.	H.G.	Please select
0.54	69.8	Zm.6916.1.S1_at	AW067358	hypothetical protein LOC100273981	-	9e-13	At5g66750	CHR1 (CHROMATIN REMODELING 1)	S.X.	H.G.	Please select
0.52	67.3	Zm.6915.1.S1_at	AW256266	hypothetical protein LOC100280116	-	5e-1	At5g64160	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.2157.7.S1_at	CF019402	ribosomal protein S11	-	1e-38	At4g30800	40S ribosomal protein S11 (RPS11B)	S.X.	H.G.	Please select
0.42	51.3	Zm.3743.2.S1_at	AY109746.1	-	-	2e+0	At5g04045	Expressed protein	S.X.	H.G.	Please select
0.40	48.5	Zm.3657.1.A1_s_at	BG874068	-	-	1e+0	At5g42635	glycine-rich protein	S.X.	H.G.	Please select
0.38	44.2	Zm.3743.2.A1_a_at	CF624095	hypothetical protein LOC100274177	-	2e+0	At5g04045	Expressed protein	S.X.	H.G.	Please select
0.35	38.9	Zm.6905.3.S1_at	CD444092	Histone H1-like protein	-	3e-1	At4g04620	ATG8B (autophagy 8b)	S.X.	H.G.	Please select
0.30	29.8	Zm.8953.1.A1_at	AY104644.1	hypothetical protein LOC100280204	-	1e-3	At5g18630	lipase class 3 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.6	97.6	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.1	97.4	GSM206330	Lower pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.0	97.3	GSM206324	Upper pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.9	97.3	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
5.7	97.2	GSM290556	CCR mutant M2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
5.6	97.1	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
5.4	97.0	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.3	96.9	GSM206326	Upper pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.9	96.7	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.9	96.7	GSM206317	Right pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	700	Zm.4929.2.S1_at	AI586452	Hypothetical protein LOC100192571	-	3e+0	At5g28620	protein kinase C-related	C.G.	S.X.	Please select
0.17	4e-34	143	Zm.18245.1.S1_at	AI665288	-	-	2e+0	At5g18130	unknown protein	C.G.	S.X.	Please select
0.14	1e-28	125	Zm.17301.1.A1_at	CF624899	hypothetical protein LOC100272664	-	5e-1	At4g32570	TIFY8 (TIFY DOMAIN PROTEIN 8)	C.G.	S.X.	Please select
0.15	2e-23	107	Zm.18954.1.A1_at	CO533875	hypothetical protein LOC100273399	-	2e+0	At1g68960	unknown protein	C.G.	S.X.	Please select
0.20	9e-20	95	Zm.18233.1.S1_at	CN845506	-	-	4e+0	At3g06760	-	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.5697.1.S1_a_at	BU093479	-	-	2e-3	At2g07050	CAS1 (cycloartenol synthase 1)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.5697.1.S1_at	BU093479	-	-	2e-3	At2g07050	CAS1 (cycloartenol synthase 1)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.4160.1.A1_at	CF243936	indole-3-acetate beta-glucosyltransferase	-	1e-2	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.4008.1.A1_at	CF624764	-	-	3e-44	At1g65540	calcium-binding EF hand family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e+0	32	Arabidopsis thaliana	At5g28620	832962	protein kinase C-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	9e-1	34	Glycine max	Gma.11541.1.S1_at	BI893673	-	-	2e-1	At1g19990	unknown protein	C.G.	S.X.	Please select
0.08	8e-2	36	Hordeum vulgare	HW01F02u_x_at	HW01F02u	-	-	3e+0	At3g55252	-	C.G.	S.X.	Please select
0.14	4e-13	75	Oryza sativa	Os04g0450600	9632.m03553	-	Conserved hypothetical protein	2e+0	At5g51610	ribosomal protein L11 family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	9e-1	34	Populus trichocarpa	PtpAffx.211786.1.S1_at	pmrna23119	hypothetical protein	-	3e+0	At5g44578	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	2e-1	36	Triticum aestivum	TaAffx.110724.1.S1_at	CA655297	-	-	3e-1	At3g29020	MYB110 (myb domain protein 110)	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1620107_at	CF518921	-	-	4e+0	At1g74930	ORA47	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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