Gene omics information

Query gene ID	Zm.4914.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.4914.1.S1_at	CD437635	-	-	8e-4	At5g49330	AtMYB111 (myb domain protein 111)	S.X.	H.G.	Please select
0.73	89.9	Zm.14498.2.A1_at	AI691791	-	-	2e-4	At1g26770	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	S.X.	H.G.	Please select
0.60	77.8	Zm.9803.1.A1_at	BM339320	-	-	1e+0	At1g64740	TUA1 (ALPHA-1 TUBULIN)	S.X.	H.G.	Please select
0.50	65.7	Zm.4586.1.A1_at	AW499317	-	-	4e-2	At2g06420	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.2591.2.A1_a_at	BG836981	autophagy-related 8b	-	2e-52	At1g62040	ATG8C (autophagy 8c)	S.X.	H.G.	Please select
0.20	14.2	Zm.6812.1.A1_s_at	AI396472	-	-	5e+0	At4g30880	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.0	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-3	44	Zm.685.1.S1_at	AY029317.1	barley mlo defense gene homolog6	-	4e-3	At1g42560	MLO9 (MILDEW RESISTANCE LOCUS O 9)	C.G.	S.X.	Please select
0.07	1e-3	44	Zm.3283.2.A1_a_at	BM335982	hypothetical protein LOC100192072	-	2e+0	At3g46110	unknown protein	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.15058.1.A1_at	BM380989	beta-propeller domains of methanol dehydrogenase type	-	6e-1	At3g11820	SYP121 (SYNTAXIN OF PLANTS 121)	C.G.	S.X.	Please select
0.02	9e-2	38	Zm.1789.1.A1_at	BG840766	-	-	4e-1	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	C.G.	S.X.	Please select
0.02	9e-2	38	Zm.10140.1.A1_at	BM381297	hypothetical protein LOC100192573	-	4e+0	At3g24500	MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C)	C.G.	S.X.	Please select
0.02	3e-1	36	ZmAffx.1022.1.S1_at	AI881590	-	-	3e+0	At5g46800	BOU (A BOUT DE SOUFFLE)	C.G.	S.X.	Please select
0.02	3e-1	36	ZmAffx.1022.1.A1_at	AI881590	-	-	3e+0	At5g46800	BOU (A BOUT DE SOUFFLE)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.4721.1.A1_at	CF634111	YLS5	-	1e-8	At3g02720	DJ-1 family protein / protease-related	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.2689.1.A1_at	BM350188	-	-	2e+0	At5g43830	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-4	46	Arabidopsis thaliana	At5g49330	834993	AtMYB111 (myb domain protein 111)	Member of the R2R3 factor gene family.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	7e-2	40	Glycine max	PsAffx.C3000085_at	PsAffx.C3000085	-	-	9e+0	At4g09030	AGP10 (ARABINOGALACTAN PROTEIN 10)	C.G.	S.X.	Please select
0.30	9e-104	377	Hordeum vulgare	Contig6782_at	Contig6782	-	-	6e-1	At5g41660	unknown protein	C.G.	S.X.	Please select
0.31	2e-89	331	Oryza sativa	Os05g0563600	AK099313.1	-	Beta-Ig-H3/fasciclin domain containing protein	6e-1	At5g09310	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	36	Populus trichocarpa	PtpAffx.3405.3.S1_at	CV269768	hypothetical protein	-	6e-12	At2g05140	phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.37	0	682	Triticum aestivum	TaAffx.113145.1.S1_at	CA617667	-	-	3e+0	At2g23430	ICK1	C.G.	S.X.	Please select
0.02	9e-1	34	Vitis vinifera	1619727_at	CF512965	-	-	2e+0	At3g04790	ribose 5-phosphate isomerase-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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