Gene omics information

Query gene ID	Zm.4898.2.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.4898.2.A1_at	AY108183.1	-	-	6e-11	At1g09270	IMPA-4 (IMPORTIN ALPHA ISOFORM 4)	S.X.	H.G.	Please select
0.60	77.8	ZmAffx.394.1.A1_at	AI676822	-	-	3e+1	At5g23140	NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7)	S.X.	H.G.	Please select
0.56	74.4	Zm.2.1.A1_at	BM347992	Ferredoxin1	-	2e+0	At3g22820	allergen-related	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.319.1.S1_at	AI670501	-	-	3e+0	At5g15830	AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3)	S.X.	H.G.	Please select
0.40	48.5	Zm.9391.1.A1_at	AF458962.1	CDC5 protein	-	2e-105	At1g09770	ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5)	S.X.	H.G.	Please select
0.12	5.9	Zm.19209.1.S1_at	CO530765	hypothetical protein LOC100191367	-	6e-14	At2g19490	recA family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.4	97.0	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.1	96.8	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.8	96.6	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.7	96.5	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.5	96.3	GSM206288	Upper pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.2	96.0	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.8	95.5	GSM206294	Lower pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.8	95.5	GSM206289	Upper pulvinus 5 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.7	95.4	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.7	95.4	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	0	1249	Zm.4898.1.S1_at	BI417088	hypothetical protein LOC100279412	-	6e-25	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	C.G.	S.X.	Please select
0.20	5e-28	125	Zm.4271.2.S1_a_at	AY103821.1	hypothetical protein LOC100193437	-	2e-20	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please select
0.12	5e-28	125	Zm.4271.2.A1_at	AY103821.1	Isoflavone reductase-like1	-	2e-20	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please select
0.22	3e-23	109	Zm.4271.4.A1_a_at	BG316519	hypothetical protein LOC100193437 /// hypothetical protein LOC100273684	-	6e-5	At1g02690	IMPA-6 (IMPORTIN ALPHA ISOFORM 6)	C.G.	S.X.	Please select
0.22	3e-23	109	Zm.4271.4.A1_at	BG316519	hypothetical protein LOC100273684	-	6e-5	At1g02690	IMPA-6 (IMPORTIN ALPHA ISOFORM 6)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.739.1.S1_at	AY105808.1	NAC domain-containing protein 78	-	6e-2	At1g68330	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.4732.1.S1_a_at	CF626249	mov34/MPN/PAD-1 family protein	-	4e-12	At1g80210	-	C.G.	S.X.	Please select
0.02	5e+0	32	ZmAffx.783.1.S1_at	AI745854	-	-	8e-7	At1g51730	RWD domain-containing protein	C.G.	S.X.	Please select
0.02	5e+0	32	ZmAffx.783.1.A1_s_at	AI745854	nucleolin	-	8e-7	At1g51730	RWD domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	6e-11	69	Arabidopsis thaliana	At1g09270	837448	IMPA-4 (IMPORTIN ALPHA ISOFORM 4)	Protein interacts with Agrobacterium proteins VirD2 and VirE2.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.27	3e-19	97	Glycine max	GmaAffx.12107.1.S1_at	AW704607	-	-	6e-14	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please select
0.44	1e-136	486	Hordeum vulgare	Contig4129_at	Contig4129	-	-	9e-26	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please select
0.44	9e-175	615	Oryza sativa	Os01g0253300	AB004660.1	-	Importin alpha 2	6e-24	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	1e-18	95	Populus trichocarpa	PtpAffx.210864.1.S1_at	pmrna21339	hypothetical protein	-	1e-64	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.41	2e-128	460	Triticum aestivum	Ta.28018.1.S1_at	CK159354	-	-	2e-27	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	C.G.	S.X.	Please select
0.26	7e-20	97	Vitis vinifera	1607723_at	CF568821	-	-	5e-18	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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