Gene omics information

Query gene ID	Zm.4898.1.S1_at
Gene name	hypothetical protein LOC100279412
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	76.1	Zm.4898.1.S1_at	BI417088	hypothetical protein LOC100279412	-	6e-25	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	S.X.	H.G.	Please select
0.57	75.1	Zm.19266.1.A1_at	CO521373	-	-	2e+1	At5g20570	RBX1 (RING-BOX 1)	S.X.	H.G.	Please select
0.50	65.7	Zm.6054.1.A1_at	AW497492	-	-	3e+0	At5g25490	zinc finger (Ran-binding) family protein	S.X.	H.G.	Please select
0.47	59.9	Zm.5517.1.A1_at	BE051194	hypothetical protein LOC100273563	-	2e-1	At1g15740	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.45	56.4	Zm.5106.1.A1_at	AI600864	hypothetical protein LOC100273412	-	1e-20	At4g22330	ATCES1	S.X.	H.G.	Please select
0.44	55.7	Zm.796.1.A1_a_at	CK370719	-	-	3e-9	At5g53140	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.44	55.7	Zm.1079.4.S1_at	AY109373.1	-	-	2e-2	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	S.X.	H.G.	Please select
0.33	36.0	Zm.14400.1.S1_at	AW000473	hypothetical protein LOC100191706	-	8e-52	At4g02720	unknown protein	S.X.	H.G.	Please select
0.30	29.8	Zm.5712.1.A1_at	AI637069	-	-	1e+1	At5g19875	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.6	98.7	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
11.8	98.6	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
11.3	98.5	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
11.1	98.5	GSM375795	Deep-sowing 10d treatment Control, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
8.0	98.0	GSM385707	Deep-sowing 10d treatment IAA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
7.9	97.9	GSM385708	Deep-sowing 10d treatment IAA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
7.7	97.9	GSM375797	Deep-sowing 10d treatment UCZ, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
7.5	97.8	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
7.5	97.8	GSM375796	Deep-sowing 10d treatment GA3, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
6.9	97.7	GSM375794	Deep-sowing 10d treatment UCZ, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	0	1249	Zm.4898.2.A1_at	AY108183.1	-	-	6e-11	At1g09270	IMPA-4 (IMPORTIN ALPHA ISOFORM 4)	C.G.	S.X.	Please select
0.23	2e-78	293	Zm.16313.1.S1_a_at	CF626466	hypothetical protein LOC100272662	-	8e+0	At5g23320	ATSTE14A (ARABIDOPSIS HOMOLOG OF YEAST STE14 A)	C.G.	S.X.	Please select
0.12	3e-37	157	Zm.16313.2.S1_x_at	BM073358	hypothetical protein LOC100272662	-	4e+0	At5g23320	ATSTE14A (ARABIDOPSIS HOMOLOG OF YEAST STE14 A)	C.G.	S.X.	Please select
0.05	3e-34	147	Zm.10115.1.S1_x_at	CF626396	early response to dehydration 15-like protein	-	2e+0	At1g62240	unknown protein	C.G.	S.X.	Please select
0.08	7e-29	129	Zm.17335.1.S1_at	CK370084	alkaline alpha galactosidase 1	-	1e-5	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	C.G.	S.X.	Please select
0.19	4e-18	93	Zm.4271.2.S1_a_at	AY103821.1	hypothetical protein LOC100193437	-	2e-20	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please select
0.09	4e-18	93	Zm.4271.2.A1_at	AY103821.1	Isoflavone reductase-like1	-	2e-20	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please select
0.17	1e-17	91	Zm.4271.4.A1_a_at	BG316519	hypothetical protein LOC100193437 /// hypothetical protein LOC100273684	-	6e-5	At1g02690	IMPA-6 (IMPORTIN ALPHA ISOFORM 6)	C.G.	S.X.	Please select
0.17	1e-17	91	Zm.4271.4.A1_at	BG316519	hypothetical protein LOC100273684	-	6e-5	At1g02690	IMPA-6 (IMPORTIN ALPHA ISOFORM 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	6e-25	117	Arabidopsis thaliana	At4g16143	827302	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	3e-55	218	Glycine max	Gma.7528.2.S1_at	BM891312	-	-	3e-49	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	C.G.	S.X.	Please select
0.46	0	1037	Hordeum vulgare	Contig4129_at	Contig4129	-	-	9e-26	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please select
0.45	0	936	Oryza sativa	Os01g0253300	AB004660.1	-	Importin alpha 2	6e-24	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	6e-38	161	Populus trichocarpa	Ptp.6439.1.S1_s_at	BU874074	hypothetical protein	-	4e-54	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	0	1041	Triticum aestivum	Ta.28018.1.S1_at	CK159354	-	-	2e-27	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	C.G.	S.X.	Please select
0.06	2e-13	77	Vitis vinifera	1607723_at	CF568821	-	-	5e-18	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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