Gene omics information

Query gene ID	Zm.4896.1.A1_x_at
Gene name	IAA13 - auxin-responsive Aux/IAA family member
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	76.1	Zm.4896.1.A1_x_at	BM350512	IAA13 - auxin-responsive Aux/IAA family member	-	3e-9	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	S.X.	H.G.	Please select
0.46	58.4	Zm.2220.4.S1_at	AY110053.1	hypothetical protein LOC100216733	-	1e-1	At5g16500	protein kinase family protein	S.X.	H.G.	Please select
0.29	28.1	Zm.9950.1.A1_at	BM350675	-	-	5e+0	At4g28020	unknown protein	S.X.	H.G.	Please select
0.20	14.2	ZmAffx.494.1.A1_at	AI770346	-	-	5e+0	At1g16960	unknown protein	S.X.	H.G.	Please select
0.13	6.8	Zm.9008.1.A1_at	AF371265.1	delta zein structural18 /// prolamin /// prolamin	-	2e+0	At5g61680	pectinesterase family protein	S.X.	H.G.	Please select
0.10	4.6	Zm.2893.1.A1_at	BG842397	hypothetical protein LOC100191652	-	1e+0	At1g77660	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.0	98.5	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
9.3	98.2	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
8.6	98.1	GSM375796	Deep-sowing 10d treatment GA3, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
8.6	98.1	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
8.3	98.0	GSM375797	Deep-sowing 10d treatment UCZ, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
8.1	98.0	GSM375794	Deep-sowing 10d treatment UCZ, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
7.9	97.9	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
5.6	97.1	GSM385707	Deep-sowing 10d treatment IAA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
5.4	97.0	GSM375795	Deep-sowing 10d treatment Control, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
5.0	96.7	GSM385708	Deep-sowing 10d treatment IAA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.95	0	1939	Zm.4896.1.A1_at	BM350512	IAA13 - auxin-responsive Aux/IAA family member	-	3e-9	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	C.G.	S.X.	Please select
0.71	2e-128	458	Zm.3080.1.A1_at	BM382308	IAA13 - auxin-responsive Aux/IAA family member	-	3e-15	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	C.G.	S.X.	Please select
0.11	1e-18	93	Zm.3607.1.A1_at	AW017627	IAA30 - auxin-responsive Aux/IAA family member	-	1e-14	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	C.G.	S.X.	Please select
0.07	5e-12	71	Zm.9537.1.A1_at	BM348544	hypothetical protein LOC100193444 /// IAA15 - auxin-responsive Aux/IAA family member	-	2e-4	At1g52830	IAA6 (INDOLE-3-ACETIC ACID 6)	C.G.	S.X.	Please select
0.07	2e-8	59	Zm.2321.2.A1_a_at	AY103603.1	hypothetical protein LOC100274569	-	1e-5	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	C.G.	S.X.	Please select
0.04	2e-8	59	Zm.2321.2.S1_at	AY103603.1	-	-	1e-5	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	C.G.	S.X.	Please select
0.04	2e-8	59	Zm.11719.1.A1_at	BM380180	IAA26 - auxin-responsive Aux/IAA family member	-	2e-5	At3g04730	IAA16	C.G.	S.X.	Please select
0.04	3e-7	56	Zm.7611.2.A1_at	BM268818	-	-	2e-3	At1g49400	emb1129 (embryo defective 1129)	C.G.	S.X.	Please select
0.04	3e-7	56	Zm.7611.1.A1_a_at	BM347935	IAA24 - auxin-responsive Aux/IAA family member	-	3e-2	At3g04730	IAA16	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	3e-9	63	Arabidopsis thaliana	At4g14550	827102	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	IAA14 is a member of the Aux/IAA protein family. Involved in lateral root development. Gain of function mutation decreases auxin-inducible gene expression. Protein is localized to the nucleus. Expressed in stele and root tip epidermis. Functions as a negative regulator of ARF7/19.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	1e-12	75	Glycine max	GmaAffx.93321.1.S1_x_at	CF809046	-	-	2e-69	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	C.G.	S.X.	Please select
0.46	8e-42	171	Hordeum vulgare	Contig2504_at	Contig2504	-	-	2e-10	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	C.G.	S.X.	Please select
0.53	2e-42	174	Oryza sativa	Os03g0742900	AK059838.1	-	AUX/IAA protein family protein	2e-19	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	4e-18	93	Populus trichocarpa	PtpAffx.39778.1.A1_at	CV262440	hypothetical protein	-	7e-53	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.49	2e-173	609	Triticum aestivum	Ta.18018.1.S1_at	CA627383	-	-	1e-9	At1g52830	IAA6 (INDOLE-3-ACETIC ACID 6)	C.G.	S.X.	Please select
0.12	8e-10	63	Vitis vinifera	1619741_at	CB339880	hypothetical protein LOC100259693	-	4e-50	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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