CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.4882.2.S1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 Zm.4882.2.S1_at CK985806 - - 9e+0 At3g62920 unknown protein S.X. H.G.
0.67 85.8 Zm.6367.1.S1_at BM259420 - - 3e-1 At4g26200 ACS7 S.X. H.G.
0.67 85.8 Zm.14071.1.A1_at AY109092.1 hypothetical protein LOC100279213 - 2e-16 At5g19330 armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein S.X. H.G.
0.61 79.5 Zm.2176.1.S1_at AY111425.1 - - 4e+0 At1g54215 proline-rich family protein S.X. H.G.
0.56 74.4 Zm.6139.2.A1_at CF018619 methionyl-tRNA synthetase - 1e-5 At2g40660 tRNA-binding region domain-containing protein S.X. H.G.
0.53 69.1 Zm.6467.1.A1_at AI692044 - - 2e+0 At5g59470 PQ-loop repeat family protein / transmembrane family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.1 99.4 GSM206296 Lower pulvinus 15 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
21.0 99.4 GSM206303 Upper pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
16.3 99.0 GSM320443 protocol: mRNA - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9 99.0 GSM206309 Lower pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
13.9 98.8 GSM206295 Lower pulvinus 5 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
12.7 98.7 GSM206289 Upper pulvinus 5 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
12.5 98.7 GSM206308 Lower pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
12.3 98.7 GSM206290 Upper pulvinus 15 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
10.1 98.4 GSM206294 Lower pulvinus 2 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
9.6 98.3 GSM206302 Upper pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 4e-49 194 Zm.2331.1.S1_x_at AY106132.1 protein induced upon tuberization - 2e+0 At3g44718 - C.G. S.X.
0.03 4e-9 61 Zm.485.1.A1_at AF236080.1 hemoglobin - 1e-1 At5g42860 unknown protein C.G. S.X.
0.03 4e-6 52 Zm.14073.1.S1_s_at CD995440 60S ribosomal protein L28 - 8e-9 At2g19730 60S ribosomal protein L28 (RPL28A) C.G. S.X.
0.03 4e-6 52 Zm.14073.1.A1_at BQ618953 - - 8e-9 At2g19730 60S ribosomal protein L28 (RPL28A) C.G. S.X.
0.02 4e-3 42 Zm.18012.1.A1_at CK827313 - - 2e-3 At5g48950 thioesterase family protein C.G. S.X.
0.02 2e-1 36 Zm.11333.1.A1_at AY108490.1 proline-rich cell wall protein-like - 2e-4 At5g37200 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 9e-1 34 Zm.9975.1.A1_at BM074697 - - 7e-6 At5g64200 ATSC35 C.G. S.X.
0.02 9e-1 34 Zm.3077.1.A1_at CF637365 calmodulin - 4e-82 At5g37780 CAM1 (CALMODULIN 1) C.G. S.X.
0.02 9e-1 34 Zm.3077.1.A1_a_at CF637365 calmodulin - 4e-82 At5g37780 CAM1 (CALMODULIN 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e+0 32 Arabidopsis thaliana At3g62920 825467 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P - - - C.G. S.X.
0.03 2e-1 38 Glycine max GmaAffx.75074.1.A1_at CD403135 - - 2e+0 At1g54095 unknown protein C.G. S.X.
0.03 2e-2 40 Hordeum vulgare Contig3187_s_at Contig3187 - - 1e+0 At1g31410 putrescine-binding periplasmic protein-related C.G. S.X.
0.02 4e+0 34 Oryza sativa Os11g0242600 9639.m01281 - Uncharacterized plant-specific domain 01627containing protein 2e+0 At5g42070 unknown protein C.G. S.X.
0.02 8e-1 36 Populus trichocarpa PtpAffx.135263.1.S1_s_at BU823432 hypothetical protein - 2e-1 At2g29300 tropinone reductase, putative / tropine dehydrogenase, putative C.G. S.X.
0.10 2e-6 54 Triticum aestivum Ta.20592.1.S1_at CA486275 - - 1e+1 At5g03190 CPUORF47 (CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 47) C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1617411_at BQ797398 hypothetical protein LOC100244514 - 2e-2 At5g57150 basic helix-loop-helix (bHLH) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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