Gene omics information

Query gene ID	Zm.4881.1.A1_at
Gene name	High mobility group protein3
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.4881.1.A1_at	CA404148	High mobility group protein3	-	6e-1	At2g19385	zinc ion binding	S.X.	H.G.	Please select
0.67	85.8	Zm.4880.1.S1_at	CF627543	hypothetical protein LOC100276737	-	2e+0	At4g13110	BSD domain-containing protein	S.X.	H.G.	Please select
0.63	81.1	Zm.2536.1.A1_at	CK347523	hypothetical protein LOC100216682	-	6e+0	At5g42960	unknown protein	S.X.	H.G.	Please select
0.57	75.1	Zm.6810.3.A1_a_at	CF627455	nudix type motif 22	-	1e+0	At2g16490	XH domain-containing protein	S.X.	H.G.	Please select
0.19	12.8	ZmAffx.1085.1.S1_at	AW018111	-	-	3e+0	At1g67035	unknown protein	S.X.	H.G.	Please select
0.10	4.6	Zm.3284.2.A1_a_at	CF631443	-	-	5e+0	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
45.2	100.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
44.1	100.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.8	99.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.6	99.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.4	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.8	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.64	0	898	Zm.14082.1.A1_s_at	AF440222.1	HMG-like nucleosome/chromatin assembly factor D	-	2e+0	At3g06455	splicing factor-related	C.G.	S.X.	Please select
0.64	0	898	Zm.14082.1.A1_at	AF440222.1	HMG-like nucleosome/chromatin assembly factor D	-	2e+0	At3g06455	splicing factor-related	C.G.	S.X.	Please select
0.45	1e-95	349	Zm.16206.1.S1_at	BG268599	HMG-like nucleosome/chromatin assembly factor D	-	7e-2	At2g32930	ZFN2 (ZINC FINGER NUCLEASE 2)	C.G.	S.X.	Please select
0.04	4e-6	52	Zm.251.3.S1_a_at	AJ006708.1	nucleosome/chromatin assembly factor D	-	1e+0	At4g27310	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.04	2e-2	40	Zm.6732.3.A1_at	CD443875	HMG1/2-like protein	-	7e-9	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.2752.1.A1_at	CA404590	hypothetical protein LOC100274105	-	1e+0	At5g09980	PROPEP4 (Elicitor peptide 4 precursor)	C.G.	S.X.	Please select
0.03	2e-2	40	Zm.2093.1.S1_at	AF440223.1	HMG type nucleosome/chromatin assembly factor D	-	2e+0	At5g63740	zinc finger protein-related	C.G.	S.X.	Please select
0.02	6e-2	38	Zm.6349.1.A1_at	CA830981	hypothetical protein LOC100277279	-	1e-7	At1g46264	AT-HSFB4	C.G.	S.X.	Please select
0.01	6e-2	38	Zm.17773.1.A1_at	CK371251	serine carboxypeptidase 1	-	8e-1	At1g53950	ubiquitin family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	36	Arabidopsis thaliana	At2g19385	816457	zinc ion binding	F:zinc ion binding;P:biological_process unknown;C:intracellular;MOFPB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	5e-2	40	Glycine max	HgAffx.19766.1.S1_at	CB375606	-	-	6e-2	At2g23320	WRKY15	C.G.	S.X.	Please select
0.25	4e-31	135	Hordeum vulgare	Contig3307_at	Contig3307	-	-	5e-1	At4g21980	APG8A (AUTOPHAGY 8A)	C.G.	S.X.	Please select
0.32	6e-64	246	Oryza sativa	Os02g0670400	AB079636.1	-	-	4e-2	At4g11300	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	8e-1	36	Populus trichocarpa	PtpAffx.42298.1.A1_at	BP931525	hypothetical protein	-	2e+0	At5g64780	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.43	1e-119	430	Triticum aestivum	TaAffx.112692.2.S1_at	CA618275	-	-	1e+0	At1g35537	-	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1618277_at	CF568829	hypothetical protein LOC100265689	-	3e-48	At1g79530	GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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