Gene omics information

Query gene ID	Zm.4880.1.S1_at
Gene name	hypothetical protein LOC100276737
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.4880.1.S1_at	CF627543	hypothetical protein LOC100276737	-	2e+0	At4g13110	BSD domain-containing protein	S.X.	H.G.	Please select
0.73	89.9	Zm.4881.1.A1_at	CA404148	High mobility group protein3	-	6e-1	At2g19385	zinc ion binding	S.X.	H.G.	Please select
0.71	88.2	Zm.6810.3.A1_a_at	CF627455	nudix type motif 22	-	1e+0	At2g16490	XH domain-containing protein	S.X.	H.G.	Please select
0.67	85.8	Zm.2536.1.A1_at	CK347523	hypothetical protein LOC100216682	-	6e+0	At5g42960	unknown protein	S.X.	H.G.	Please select
0.21	15.5	Zm.3219.3.A1_at	AY109877.1	-	-	2e-119	At2g29630	THIC (ThiaminC)	S.X.	H.G.	Please select
0.19	12.8	ZmAffx.1085.1.S1_at	AW018111	-	-	3e+0	At1g67035	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.1	94.3	GSM206317	Right pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.8	93.5	GSM206297	Lower pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.7	93.2	GSM206293	Right pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.6	92.9	GSM206287	Left pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.6	92.9	GSM258538	DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 4	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
2.6	92.9	GSM258535	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 3	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
2.6	92.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM258533	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 2	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
2.5	92.6	GSM206294	Lower pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.5	92.6	GSM206311	Left pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	Zm.16287.1.S1_at	CO524379	hypothetical protein LOC100276591	-	9e-13	At3g17800	-	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.7166.1.A1_at	AF200532.1	cellulose synthase8	-	3e-36	At4g39350	CESA2 (CELLULOSE SYNTHASE A2)	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.6726.2.A1_at	AY112394.1	-	-	1e-1	At5g16250	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.6726.2.S1_at	AY112394.1	-	-	1e-1	At5g16250	unknown protein	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.3171.1.A1_at	AY104553.1	RNA binding protein	-	4e-12	At2g43970	La domain-containing protein	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.15220.1.A1_at	BM336448	-	-	1e+0	At5g52975	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.14841.1.A1_at	AI491693	hypothetical protein LOC100191514	-	2e+0	At2g07681	cytochrome c biogenesis protein, putative	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.5621.1.A1_at	CK370677	hypothetical protein LOC100273111	-	3e+0	At2g33990	iqd9 (IQ-domain 9)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.1975.1.S1_at	BF729513	pectinesterase-1	-	7e-3	At3g05610	pectinesterase family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At4g13110	826925	BSD domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-1	38	Glycine max	PsAffx.C160000015_at	PsAffx.C160000015	-	-	8e+0	At3g14590	-	C.G.	S.X.	Please select
0.53	7e-125	446	Hordeum vulgare	Contig8974_at	Contig8974	-	-	2e+0	At4g33780	-	C.G.	S.X.	Please select
0.55	1e-151	537	Oryza sativa	Os01g0555300	AK068308.1	-	-	2e+0	At4g29980	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	1e-8	61	Populus trichocarpa	PtpAffx.5318.1.S1_at	CX654980	-	-	3e-21	At5g11280	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.52	3e-132	472	Triticum aestivum	Ta.9553.1.S1_at	CD454568	-	-	8e+0	At3g46430	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Vitis vinifera	1616771_at	CF074722	-	-	2e-4	At5g11280	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage