Gene omics information

Query gene ID Zm.487.1.S1_a_at
Gene name silky1
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8094.0Zm.487.1.S1_a_atAF181479.1silky1-8e-3At2g22540SVP (SHORT VEGETATIVE PHASE)S.X.H.G.
0.6077.8Zm.4271.2.A1_atAY103821.1Isoflavone reductase-like1-2e-20At3g06720IMPA-1 (IMPORTIN ALPHA ISOFORM 1)S.X.H.G.
0.5065.7Zm.5237.1.A1_atAY107290.1hypothetical protein LOC100273890-2e-19At1g47260GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)S.X.H.G.
0.4455.7Zm.1382.1.S1_atBQ528972hypothetical protein LOC100194328-1e-1At4g33130-S.X.H.G.
0.4455.7Zm.2383.1.A1_atBG842498hypothetical protein LOC100275670-5e+0At2g13820protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinS.X.H.G.
0.4251.3Zm.5654.1.A1_atBG874013hypothetical protein LOC100280184-5e-1At5g61200-S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
20.499.3GSM162264Mutant 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maize
16.899.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.999.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.798.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.798.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.398.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.398.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.498.4GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.498.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.198.2GSM253278ZM_8d_SG200_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.151e-39163Zm.335.1.S1_a_atBM078498Zea mays MADS16-3e-2At3g57390AGL18C.G.S.X.
0.113e-25115Zm.336.2.A1_a_atAW055920Zea mays MADS29-2e+0At4g37940AGL21C.G.S.X.
0.101e-1893Zm.14828.1.S1_atAJ430632.1m15 protein-8e-10At5g60910AGL8 (agamous-like 8)C.G.S.X.
0.086e-1787Zm.336.1.S1_atAW144867ER6 protein /// Zea mays MADS29-2e-1At1g09740ethylene-responsive protein, putativeC.G.S.X.
0.073e-1685Zm.9560.1.A1_atBM382073m17 protein-3e-2At1g77080-C.G.S.X.
0.103e-1685Zm.1206.1.S1_atAI834095m4 protein-2e-4At5g60910AGL8 (agamous-like 8)C.G.S.X.
0.082e-1479Zm.14366.1.S1_atCD438154m28 protein-2e-4At5g60910AGL8 (agamous-like 8)C.G.S.X.
0.106e-1477Zm.578.1.S1_atAF112150.1MADS box protein 3-3e-3At5g60910AGL8 (agamous-like 8)C.G.S.X.
0.091e-1273Zm.292.1.S1_atL46397.1MADS box protein-2e-7At3g61120AGL13 (AGAMOUS-LIKE 13)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.058e-342Arabidopsis thalianaAt2g22540816787SVP (SHORT VEGETATIVE PHASE)Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway. SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter.---C.G.S.X.
0.055e-550Glycine maxGma.11106.1.S1_a_atBU549106MADS-box protein GmNMH7-1e-1At3g57390AGL18C.G.S.X.
0.111e-1273Hordeum vulgareContig2198_atContig2198--3e-6At1g24260SEP3 (SEPALLATA3)C.G.S.X.
0.491e-178626Oryza sativaOs06g0712700AB003323.1-MADS-box protein SPW11e-2At2g22540SVP (SHORT VEGETATIVE PHASE)C.G.S.X.
0.055e-550Populus trichocarpaPtpAffx.205555.1.S1_s_atpmrna10986MIKC mads-box transcription factor /// hypothetical protein-2e-11At5g20240PI (PISTILLATA)C.G.S.X.
0.520682Triticum aestivumTa.143.1.S1_atAB107993.1APETALA3-like MADS box protein-9e-3At2g22540SVP (SHORT VEGETATIVE PHASE)C.G.S.X.
0.074e-548Vitis vinifera1614123_atCF373459PISTILLATA-like MADS-box protein-like-8e-9At5g20240PI (PISTILLATA)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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