Gene omics information

Query gene ID	Zm.4862.2.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.4862.2.S1_at	AI666004	-	-	2e+0	At2g23920	unknown protein	S.X.	H.G.	Please select
0.63	81.1	Zm.13870.2.A1_at	AF099435.1	R2R3MYB-domain protein	-	2e-5	At5g40330	MYB23 (MYB DOMAIN PROTEIN 23)	S.X.	H.G.	Please select
0.58	75.1	Zm.16345.1.S1_at	CF602410	hypothetical protein LOC100278582	-	5e+0	At5g39140	unknown protein	S.X.	H.G.	Please select
0.54	69.8	Zm.1914.1.S1_at	BM334513	hypothetical protein LOC100277080	-	2e-1	At4g19645	-	S.X.	H.G.	Please select
0.53	69.1	Zm.5851.1.A1_at	BM337140	hypothetical protein LOC100272940	-	1e-2	At4g38630	RPN10 (REGULATORY PARTICLE NON-ATPASE 10)	S.X.	H.G.	Please select
0.51	66.4	Zm.3664.1.S1_at	CF630053	hypothetical protein LOC100192489	-	1e-15	At5g45430	protein kinase, putative	S.X.	H.G.	Please select
0.51	66.4	Zm.12357.1.A1_at	CB381715	hypothetical protein LOC100272551	-	3e-5	At5g02030	RPL (REPLUMLESS)	S.X.	H.G.	Please select
0.49	61.9	Zm.4433.1.S1_at	AY108076.1	G-patch domain containing protein	-	4e-2	At3g09850	D111/G-patch domain-containing protein	S.X.	H.G.	Please select
0.47	59.9	Zm.1724.1.S1_at	BE512255	hypothetical protein LOC100191314	-	2e-12	At3g09630	60S ribosomal protein L4/L1 (RPL4A)	S.X.	H.G.	Please select
0.43	52.8	Zm.5777.1.A1_at	AI649584	hypothetical protein LOC100273681	-	7e+0	At4g30660	hydrophobic protein, putative / low temperature and salt responsive protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.1	99.5	GSM258535	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 3	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
23.0	99.5	GSM258534	DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 2	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
22.1	99.4	GSM258532	DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 1	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
20.9	99.4	GSM258538	DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 4	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
19.9	99.3	GSM258533	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 2	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
18.8	99.2	GSM258536	DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 3	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
16.6	99.1	GSM258531	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 1	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
15.8	99.0	GSM258537	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 4	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
11.1	98.5	GSM258185	Oh43 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
10.0	98.4	GSM258194	Oh43 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	7e-112	400	Zm.4862.2.A1_at	AI666004	-	-	2e+0	At2g23920	unknown protein	C.G.	S.X.	Please select
0.27	2e-41	167	Zm.4862.1.S1_a_at	CF629721	hypothetical protein LOC100273666	-	2e-27	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.27	2e-41	167	Zm.4862.1.S1_at	CF629721	hypothetical protein LOC100273666	-	2e-27	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.01	1e-2	38	Zm.10340.1.S1_at	AF443599.1	enhancer of polycomb-like protein101	-	3e-4	At1g79020	transcription factor-related	C.G.	S.X.	Please select
0.02	6e-1	32	Zm.885.2.S1_at	AY104686.1	ras-related protein RHN1	-	1e-11	At4g19640	ARA7	C.G.	S.X.	Please select
0.03	6e-1	32	Zm.870.1.A1_at	CA828268	-	-	1e-1	At1g30845	unknown protein	C.G.	S.X.	Please select
0.01	6e-1	32	Zm.7341.1.A1_at	BM267652	TFIIB-related protein	-	2e-14	At4g36650	ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN)	C.G.	S.X.	Please select
0.04	6e-1	32	Zm.15179.1.A1_at	BM340732	hypothetical protein LOC100278013	-	3e-1	At5g42930	triacylglycerol lipase	C.G.	S.X.	Please select
0.02	6e-1	32	Zm.10591.1.S1_at	BQ479053	hypothetical protein LOC100194290	-	3e-22	At3g58140	phenylalanyl-tRNA synthetase class IIc family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e+0	32	Arabidopsis thaliana	At2g23920	816924	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e+0	32	Glycine max	GmaAffx.21325.1.S1_at	AW707103	-	-	1e-1	At4g13440	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.04	3e+0	30	Hordeum vulgare	S0000800206B12F1_s_at	S0000800206B12F1	-	-	1e+1	At5g42420	transporter-related	C.G.	S.X.	Please select
0.03	1e+1	30	Oryza sativa	Os.9636.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	5e-1	34	Populus trichocarpa	PtpAffx.18954.1.A1_at	CV227565	hypothetical protein	-	5e-3	At5g25590	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	6e+0	30	Triticum aestivum	TaAffx.108207.1.S1_at	CA690703	-	-	2e-8	At5g44340	TUB4	C.G.	S.X.	Please select
0.04	2e+0	30	Vitis vinifera	1609692_at	CF210635	-	-	1e+0	At2g41100	TCH3 (TOUCH 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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