Gene omics information

Query gene ID	Zm.4853.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.4853.1.S1_at	CD439703	-	-	2e-1	At2g45070	SEC61 BETA	S.X.	H.G.	Please select
0.67	85.8	Zm.4194.1.A1_at	AI861230	hypothetical protein LOC100276018	-	3e+0	At1g71180	6-phosphogluconate dehydrogenase NAD-binding domain-containing protein	S.X.	H.G.	Please select
0.67	85.8	Zm.14617.1.A1_at	BM080453	Hypothetical protein LOC100191188	-	2e+0	At2g33130	RALFL18 (ralf-like 18)	S.X.	H.G.	Please select
0.63	81.1	Zm.13975.1.A1_at	CK985455	carbonyl reductase 3	-	6e-1	At4g20880	ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2)	S.X.	H.G.	Please select
0.50	65.7	Zm.12300.1.A1_at	CF626520	ruBisCO large subunit-binding protein subunit alpha	-	1e-37	At2g28000	CPN60A (CHAPERONIN-60ALPHA)	S.X.	H.G.	Please select
0.23	18.6	Zm.17816.2.S1_a_at	CK144883	tRNA pseudouridine synthase family protein	-	2e-2	At1g76120	tRNA pseudouridine synthase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.6	99.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.5	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	8e-116	416	Zm.6957.1.A1_at	AI619366	hypothetical protein LOC100279739	-	2e+0	At1g06960	small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.7279.1.S1_at	BI894263	hypothetical protein LOC100273019	-	1e+0	At5g62460	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.18561.1.A1_at	CO517421	hypothetical protein LOC100193602	-	1e-1	At5g04660	CYP77A4	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.12212.1.A1_at	CA404781	hypothetical protein LOC100275184	-	2e-7	At1g67100	LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)	C.G.	S.X.	Please select
0.02	5e+0	32	ZmAffx.362.1.A1_at	AI670617	-	-	8e-1	At1g56345	pseudouridine synthase family protein	C.G.	S.X.	Please select
0.02	5e+0	32	ZmAffx.362.1.S1_at	AI670617	-	-	8e-1	At1g56345	pseudouridine synthase family protein	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.728.1.A1_at	BM338202	GR1a protein	-	5e-1	At4g12550	AIR1	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.7020.1.A1_at	CA402867	-	-	1e-13	At1g55500	ECT4	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.6527.2.A1_at	BM338554	hypothetical protein LOC100273254	-	5e-1	At1g12090	ELP (EXTENSIN-LIKE PROTEIN)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	38	Arabidopsis thaliana	At2g45070	819114	SEC61 BETA	Sec61 Beta Subunit	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	GmaAffx.92266.1.S1_s_at	CF807991	-	-	8e-26	At2g20130	LCV1 (LIKE COV 1)	C.G.	S.X.	Please select
0.04	9e-8	57	Hordeum vulgare	Contig8148_at	Contig8148	-	-	2e-2	At2g16380	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	C.G.	S.X.	Please select
0.03	2e-15	85	Oryza sativa	Os08g0497300	AK068384.1	-	Cellular retinaldehyde binding/alpha-tocopheroltransport family protein	5e-3	At2g21520	transporter	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	36	Populus trichocarpa	PtpAffx.82386.1.A1_at	CV248857	hypothetical protein	-	5e-1	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	3e-6	54	Triticum aestivum	TaAffx.128604.1.S1_s_at	CK207548	-	-	7e+0	At5g64160	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	Vitis vinifera	1622237_at	CD006210	-	-	5e+0	At4g16295	SPH1 (S-PROTEIN HOMOLOGUE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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