Gene omics information

Query gene ID	Zm.4845.1.S1_x_at
Gene name	alcohol dehydrogenase1 /// syntaxin-related protein KNOLLE
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.4845.1.S1_x_at	CD442886	alcohol dehydrogenase1 /// syntaxin-related protein KNOLLE	-	4e-5	At4g03330	SYP123 (SYNTAXIN OF PLANTS 123)	S.X.	H.G.	Please select
0.67	85.8	Zm.4846.1.A1_at	BQ538226	cyclin B2	-	3e-7	At1g76310	CYCB2	S.X.	H.G.	Please select
0.60	77.8	Zm.14456.2.S1_a_at	CA399302	allyl alcohol dehydrogenase-like protein	-	2e-5	At2g36620	RPL24A (ribosomal protein L24)	S.X.	H.G.	Please select
0.57	75.1	Zm.9411.1.S1_at	CA827391	SNF1-related protein kinase regulatory subunit beta-2	-	4e-1	At4g26150	CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1)	S.X.	H.G.	Please select
0.50	65.7	Zm.3780.1.S1_at	AW438304	low-molecular-weight cysteine-rich protein LCR69	-	9e-2	At1g47317	-	S.X.	H.G.	Please select
0.40	48.5	Zm.5870.1.S1_at	BF729179	hypothetical protein LOC100272552	-	1e+0	At3g26147	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.5	99.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
26.2	99.7	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
23.1	99.5	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
14.9	98.9	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
13.1	98.7	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
12.8	98.7	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
12.2	98.6	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.8	98.1	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.0	97.7	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.4	97.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	2514	Zm.4845.1.S1_at	CD442886	alcohol dehydrogenase1 /// syntaxin-related protein KNOLLE	-	4e-5	At4g03330	SYP123 (SYNTAXIN OF PLANTS 123)	C.G.	S.X.	Please select
0.73	0	1572	Zm.4845.2.S1_at	AI833522	-	-	3e+0	At1g08560	SYP111 (SYNTAXIN OF PLANTS 111)	C.G.	S.X.	Please select
0.08	1e-9	63	Zm.9852.1.A1_at	BM381073	syntaxin 121	-	5e-3	At5g63740	zinc finger protein-related	C.G.	S.X.	Please select
0.02	5e-3	42	Zm.2724.1.S1_at	BQ538519	hypothetical protein LOC100193244	-	3e-13	At3g22960	PKP-ALPHA	C.G.	S.X.	Please select
0.02	5e-3	42	Zm.18998.1.S1_at	BF727820	esterase	-	8e-1	At4g00895	ATP synthase delta chain-related	C.G.	S.X.	Please select
0.02	5e-3	42	Zm.15667.1.A1_at	CD437700	-	-	1e+0	At5g43280	ATDCI1 (DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1)	C.G.	S.X.	Please select
0.02	5e-3	42	Zm.15667.1.S1_at	CD437700	-	-	1e+0	At5g43280	ATDCI1 (DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1)	C.G.	S.X.	Please select
0.02	7e-2	38	Zm.10583.1.A1_at	BQ538459	-	-	2e+1	At5g02470	DPA	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.8215.1.A1_at	CO532014	anther-specific proline-rich protein APG	-	8e-4	At4g30140	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-5	50	Arabidopsis thaliana	At4g03330	827970	SYP123 (SYNTAXIN OF PLANTS 123)	member of SYP12 Gene Family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-4	48	Glycine max	GmaAffx.75120.1.A1_at	CD412911	-	-	2e+0	At3g62640	unknown protein	C.G.	S.X.	Please select
0.07	2e-12	73	Hordeum vulgare	Contig22370_at	Contig22370	-	-	5e-3	At1g29160	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.65	0	900	Oryza sativa	Os03g0736500	9631.m05153	-	Syntaxin-related protein KNOLLE (Syntaxin 111)(AtSYP111)	4e-5	At3g11820	SYP121 (SYNTAXIN OF PLANTS 121)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-3	44	Populus trichocarpa	PtpAffx.2045.1.S1_at	CK093245	hypothetical protein	-	5e-20	At1g08560	SYP111 (SYNTAXIN OF PLANTS 111)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.58	1e-147	523	Triticum aestivum	Ta.11282.1.S1_a_at	CA616162	-	-	1e-2	At3g11820	SYP121 (SYNTAXIN OF PLANTS 121)	C.G.	S.X.	Please select
0.06	1e-8	59	Vitis vinifera	1608365_at	CF205987.1	hypothetical protein LOC100265818	-	4e-4	At3g52400	SYP122 (SYNTAXIN OF PLANTS 122)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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