CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.484.1.A1_at

Gene name elongation factor 1 alpha

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 77.8 Zm.484.1.A1_at AF136827.1 elongation factor 1 alpha - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha S.X. H.G.
0.52 67.3 Zm.3715.1.A1_at AY107107.1 - - 9e-56 At5g11200 DEAD/DEAH box helicase, putative S.X. H.G.
0.46 58.4 Zm.3080.1.A1_at BM382308 IAA13 - auxin-responsive Aux/IAA family member - 3e-15 At3g23050 IAA7 (INDOLE-3-ACETIC ACID 7) S.X. H.G.
0.46 58.4 Zm.3773.1.A1_at AY110209.1 Hypothetical protein LOC100193094 - 4e+0 At4g18620 - S.X. H.G.
0.43 52.8 Zm.4201.1.A1_at BM381822 hypothetical protein LOC100274325 - 2e+0 At3g21215 RNA-binding protein, putative S.X. H.G.
0.38 44.2 Zm.17197.1.A1_at CO531814 DNA binding protein - 3e-3 At3g51960 bZIP family transcription factor S.X. H.G.
0.38 44.2 Zm.1989.1.S1_at AW566298 hypothetical protein LOC100193882 - 3e-14 At2g41970 protein kinase, putative S.X. H.G.
0.36 41.3 Zm.2236.1.S1_at BQ538247 peroxiredoxin bcp - 9e-9 At3g26060 ATPRX Q S.X. H.G.
0.36 41.3 Zm.14347.1.S1_at AY106522.1 - - 2e+0 At3g29590 AT5MAT S.X. H.G.
0.29 28.1 Zm.6941.1.A1_at CF638044 - - 4e-1 At3g46770 transcriptional factor B3 family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
40.5 99.9 GSM320465 protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
33.2 99.9 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4 99.1 GSM320466 protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3 97.4 GSM320463 protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0 96.7 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9 96.7 GSM320461 protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5 96.3 GSM320472 protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4 96.2 GSM320469 protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5 95.1 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3 94.7 GSM206287 Left pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.50 0 1336 Zm.3892.6.A1_x_at CD441708 elongation factor 1 alpha - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.64 0 1314 Zm.3892.2.A1_a_at AF136824.1 elongation factor 1 alpha - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.64 0 1314 Zm.3892.2.A1_x_at AF136824.1 elongation factor 1 alpha - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.70 0 1185 Zm.3892.3.A1_at AF136829.1 elongation factor 1 alpha - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.66 0 1170 Zm.3892.8.S1_at CA404367 Elongation factor 1 alpha - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.66 0 1170 Zm.3892.8.S1_a_at CA404367 Elongation factor 1 alpha - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.66 0 1170 Zm.3892.8.S1_x_at CA404367 Elongation factor 1 alpha - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.61 0 1065 Zm.3157.1.A1_at AF136826.1 Elongation factor 1 alpha - 0 At1g07930 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.64 0 1005 Zm.14419.1.A1_s_at U76259.1 elongation factor 1-alpha - 0 At1g07940 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.70 0 759 Arabidopsis thaliana At1g07920 837307 elongation factor 1-alpha / EF-1-alpha F:calmodulin binding, translation elongation factor activity;P:response to cadmium ion;C:mitochondrion, nucleolus, plasma membrane, chloroplast, membrane;BMOFPAV - - - C.G. S.X.
0.62 2e-178 626 Glycine max Gma.17616.1.S1_at AW568275 - - 0 At5g60390 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.68 0 981 Hordeum vulgare Contig397_x_at Contig397 - - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.64 0 1078 Oryza sativa Os03g0177400 AK103738.1 - EF-1 alpha 0 At1g07920 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.60 1e-139 498 Populus trichocarpa PtpAffx.291.1.A1_x_at CV271058 hypothetical protein - 0 At1g07940 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.61 0 839 Triticum aestivum Ta.659.6.S1_x_at BJ282457 - - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
0.59 0 771 Vitis vinifera 1618385_at CF518525 hypothetical protein LOC100246711 - 0 At1g07940 elongation factor 1-alpha / EF-1-alpha C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage