Gene omics information

Query gene ID	Zm.4823.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.4823.1.A1_at	CD999070	-	-	4e-23	At1g76550	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	S.X.	H.G.	Please select
0.61	79.5	Zm.697.1.A1_a_at	AB102957.1	histidine kinase 3	-	1e-17	At5g35750	AHK2 (ARABIDOPSIS HISTIDINE KINASE 2)	S.X.	H.G.	Please select
0.60	77.8	Zm.7679.1.A1_at	BM079456	hypothetical protein LOC100273504	-	3e-12	At5g19820	emb2734 (embryo defective 2734)	S.X.	H.G.	Please select
0.50	65.7	Zm.12634.4.S1_a_at	CF057123	60S ribosomal protein L23	-	8e-61	At1g04480	60S ribosomal protein L23 (RPL23A)	S.X.	H.G.	Please select
0.48	61.3	Zm.12821.1.A1_at	CA398688	-	-	1e+1	At5g47320	RPS19 (RIBOSOMAL PROTEIN S19)	S.X.	H.G.	Please select
0.42	51.3	Zm.3171.1.A1_at	AY104553.1	RNA binding protein	-	4e-12	At2g43970	La domain-containing protein	S.X.	H.G.	Please select
0.40	48.5	Zm.4878.1.A1_at	AW288995	hsc70-interacting protein	-	6e-8	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	S.X.	H.G.	Please select
0.38	44.2	Zm.1881.1.S1_at	CF011561	-	-	5e-1	At3g17590	BSH (BUSHY GROWTH)	S.X.	H.G.	Please select
0.37	42.3	Zm.4992.1.A1_at	CA404887	ubiquitin-activating enzyme E1 domain-containing protein 1	-	8e-29	At1g05350	thiF family protein	S.X.	H.G.	Please select
0.33	36.0	Zm.6946.2.A1_at	CO528668	Hypothetical protein LOC100191975	-	3e-6	At1g11680	CYP51G1 (CYTOCHROME P450 51G1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.5	99.5	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM253274	ZM_8d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
15.4	99.0	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM253276	ZM_8d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
9.7	98.3	GSM253275	ZM_8d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
9.7	98.3	GSM320440	protocol: mRNA - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	4e-58	224	Zm.2247.1.A1_at	BG321065	hypothetical protein LOC100193340	-	1e-21	At1g76550	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	C.G.	S.X.	Please select
0.36	6e-42	171	Zm.16196.1.A1_at	CK985484	pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit	-	7e-6	At1g20950	pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.7837.1.S1_at	AY108511.1	pyruvate dehydrogenase E1 component subunit beta	-	2e-69	At1g30120	PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA)	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.13687.1.A1_at	AI691660	hypothetical protein LOC100192733	-	2e-31	At2g36130	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.9886.1.A1_at	BM332736	-	-	1e+0	At3g22070	proline-rich family protein	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.8935.1.A1_at	BM381068	hypothetical protein LOC100276386	-	7e+0	At3g58470	methyltransferase/ nucleic acid binding	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.6995.2.A1_a_at	BG873820	prefoldin subunit 3 /// prefoldin subunit 3	-	7e-3	At5g49510	PDF3 (PREFOLDIN 3)	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.6995.2.A1_at	BG873820	prefoldin subunit 3	-	7e-3	At5g49510	PDF3 (PREFOLDIN 3)	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.6995.1.A1_at	BM336044	prefoldin subunit 3	-	6e-10	At5g49510	PDF3 (PREFOLDIN 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	4e-23	109	Arabidopsis thaliana	At1g76550	843988	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:glycolysis;C:pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex;BOPAMF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	5e-11	69	Glycine max	Gma.9944.2.S1_at	CD413759	-	-	2e-70	At1g76550	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	C.G.	S.X.	Please select
0.44	4e-77	287	Hordeum vulgare	Contig21764_at	Contig21764	-	-	1e-19	At1g76550	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	C.G.	S.X.	Please select
0.35	2e-103	377	Oryza sativa	Os06g0326400	CB667878	-	Phosphofructokinase family protein	6e-49	At1g76550	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.26	9e-16	85	Populus trichocarpa	Ptp.4812.1.S1_at	CV252561	-	-	1e-72	At1g20950	pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	7e-59	228	Triticum aestivum	TaAffx.58124.1.S1_at	CA622222	-	-	2e-2	At1g20950	pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related	C.G.	S.X.	Please select
0.14	1e-11	69	Vitis vinifera	1610956_at	CF207701	similar to Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha	-	6e-18	At1g76550	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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