Gene omics information

Query gene ID	Zm.482.1.S1_at
Gene name	bifunctional dihydrofolate reductase-thymidylate synthase
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	96.3	Zm.482.1.S1_at	AF073488.1	bifunctional dihydrofolate reductase-thymidylate synthase	-	1e-50	At2g16370	THY-1 (THYMIDYLATE SYNTHASE 1)	S.X.	H.G.	Please select
0.73	89.9	Zm.18356.1.S1_at	CO518238	-	-	4e-1	At2g05810	armadillo/beta-catenin repeat family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.19280.1.S1_at	CO524637	hypothetical protein LOC100276261	-	4e-6	At5g39660	CDF2 (CYCLING DOF FACTOR 2)	S.X.	H.G.	Please select
0.47	59.9	Zm.12546.2.A1_a_at	AI770557	ATP binding protein	-	3e+0	At5g56150	UBC30 (ubiquitin-conjugating enzyme 30)	S.X.	H.G.	Please select
0.46	58.4	Zm.15697.1.A1_at	CD441154	hypothetical protein LOC100191504	-	3e-2	At5g63150	unknown protein	S.X.	H.G.	Please select
0.27	24.6	Zm.4536.1.S1_at	CF348908	kinesin heavy chain isolog	-	7e-4	At1g20220	nucleic acid binding	S.X.	H.G.	Please select
0.21	15.5	Zm.10867.1.A1_at	BM073190	-	-	8e-2	At2g20350	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.5	95.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.0	94.0	GSM202318	B73xMo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.0	94.0	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.8	93.5	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.8	93.5	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.7	93.2	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.7	93.2	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.7	93.2	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.6	92.9	GSM202313	B73xMo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	4e-20	99	Zm.9839.1.S1_at	AY105069.1	hypothetical protein LOC100193033	-	3e+0	At2g17300	unknown protein	C.G.	S.X.	Please select
0.07	4e-20	99	Zm.9839.1.A1_at	BM339393	Hypothetical protein LOC100193033	-	3e+0	At2g17300	unknown protein	C.G.	S.X.	Please select
0.03	4e-17	89	Zm.5037.1.A1_a_at	AF527611.1	histone deacetylase HDA110	-	4e-7	At3g18520	HDA15	C.G.	S.X.	Please select
0.07	2e-16	87	Zm.6662.1.A1_a_at	AY108391.1	50S ribosomal protein L20	-	3e-5	At1g16740	ribosomal protein L20 family protein	C.G.	S.X.	Please select
0.04	2e-16	87	Zm.6139.1.A1_at	CA831794	-	-	5e+0	At4g01328	unknown protein	C.G.	S.X.	Please select
0.04	2e-16	87	Zm.6139.1.S1_a_at	CA831794	methionyl-tRNA synthetase	-	5e+0	At4g01328	unknown protein	C.G.	S.X.	Please select
0.05	4e-14	79	Zm.14429.1.A1_a_at	BE344945	elongation factor 1-delta 1	-	3e-24	At2g18110	elongation factor 1-beta, putative / EF-1-beta, putative	C.G.	S.X.	Please select
0.04	3e-12	73	Zm.15714.1.S1_a_at	AJ488103.1	transglutaminase	-	7e-2	At4g33660	unknown protein	C.G.	S.X.	Please select
0.03	6e-10	65	Zm.13585.1.S1_at	AY107846.1	hypothetical protein LOC100274237	-	2e+0	At4g11060	MTSSB (mitochondrially targeted single-stranded DNA binding protein)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	1e-50	202	Arabidopsis thaliana	At2g16370	816134	THY-1 (THYMIDYLATE SYNTHASE 1)	Encodes a bifunctional dihydrofolate reductase - thymidylate synthase gene. This is unique in Arabidopsis and protozoa. Other organisms have independent genes for this function.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.33	5e-41	171	Glycine max	Gma.483.1.S1_at	BU083513	dihydrofolate reductase-thymidylate synthase	-	1e-67	At2g16370	THY-1 (THYMIDYLATE SYNTHASE 1)	C.G.	S.X.	Please select
0.32	2e-112	406	Hordeum vulgare	Contig14767_at	Contig14767	-	-	8e-46	At4g34570	THY-2 (thymidylate synthase 2)	C.G.	S.X.	Please select
0.30	1e-107	393	Oryza sativa	Os12g0446900	CR289953	-	Bifunctional dihydrofolate reductase-thymidylatesynthase (DHFR-TS) [Includes: Dihydrofolate reductase (EC1.5.1.3)	2e-9	At2g16370	THY-1 (THYMIDYLATE SYNTHASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	2e-24	115	Populus trichocarpa	PtpAffx.118433.2.A1_a_at	CK090880	hypothetical protein	-	2e-49	At2g16370	THY-1 (THYMIDYLATE SYNTHASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e-14	81	Triticum aestivum	TaAffx.112687.1.S1_at	CA621899	-	-	2e+1	Atmg00770	-	C.G.	S.X.	Please select
0.19	2e-27	123	Vitis vinifera	1613455_at	CF207343	-	-	5e-69	At4g34570	THY-2 (thymidylate synthase 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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