Gene omics information

Query gene ID Zm.481.1.S1_at
Gene name mismatch binding protein Mus3
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9199.0Zm.481.1.S1_atAF227632.1mismatch binding protein Mus3-2e-8At4g02070MSH6 (MUTS HOMOLOG 6)S.X.H.G.
0.9199.0Zm.4810.1.A1_atAI745785--5e+0At3g60390HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3)S.X.H.G.
0.8094.0Zm.5231.1.S1_atAW059997--2e-1At2g44950HUB1 (HISTONE MONO-UBIQUITINATION 1)S.X.H.G.
0.5775.1Zm.3157.4.A1_atAI734519--5e-1At1g09220pentatricopeptide (PPR) repeat-containing proteinS.X.H.G.
0.5065.7Zm.675.2.S1_atAF332178.1beta-expansin 5-3e-1At4g19270unknown proteinS.X.H.G.
0.4251.3Zm.5277.1.S1_atAI619073--1e+0At4g39750F-box family protein-relatedS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
29.399.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.399.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.199.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.899.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.899.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.298.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.098.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.998.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.198.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.095.8GSM202298B73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.6703077Zm.481.1.A1_atAF227632.1mismatch binding protein Mus3-2e-8At4g02070MSH6 (MUTS HOMOLOG 6)C.G.S.X.
0.012e-344Zm.216.1.S1_atAJ238787.1MutS homolog2-2e-18At3g24495MSH7 (MUTS HOMOLOG 7)C.G.S.X.
0.011e-138ZmAffx.20.1.A1_atAI600385--3e+0At4g02550unknown proteinC.G.S.X.
0.011e-138ZmAffx.20.1.S1_atAI600385--3e+0At4g02550unknown proteinC.G.S.X.
0.015e-136Zm.7103.1.S1_atBM335919--6e-57At4g2482026S proteasome regulatory subunit, putative (RPN7)C.G.S.X.
0.015e-136Zm.16813.1.S1_atAI649555--2e+0At5g24870zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.012e+034Zm.832.1.A1_atAY107728.1hypothetical protein LOC100275137-1e+0At1g54140TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)C.G.S.X.
0.012e+034Zm.832.1.S1_atAY107728.1--1e+0At1g54140TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)C.G.S.X.
0.012e+034Zm.3715.2.A1_a_atAY103872.1hypothetical protein LOC100273717 /// spliceosome RNA helicase BAT1-9e-152At5g11170ATP binding / ATP-dependent helicase/ helicase/ nucleic acid bindingC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e-861Arabidopsis thalianaAt4g02070828147MSH6 (MUTS HOMOLOG 6)encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex.---C.G.S.X.
0.014e-138Glycine maxHgAffx.19914.1.S1_atCK349758--2e-2At5g28640AN3 (ANGUSTIFOLIA 3)C.G.S.X.
0.156e-41169Hordeum vulgareContig22271_atContig22271--9e+0At3g55470C2 domain-containing proteinC.G.S.X.
0.470852Oryza sativaOs09g04076009637.m02072-DNA mismatch repair protein MutS, C-terminaldomain containing protein4e-17At4g02070MSH6 (MUTS HOMOLOG 6)C.G.S.X.
0.102e-1275Populus trichocarpaPtpAffx.211727.1.S1_atpmrna22979hypothetical protein-9e-49At4g02070MSH6 (MUTS HOMOLOG 6)C.G.S.X.
0.161e-77291Triticum aestivumTa.24096.1.S1_atAJ131670.2MSH6 protein-3e-2At3g43700ATBPM6 (BTB-POZ and MATH domain 6)C.G.S.X.
0.013e-136Vitis vinifera1612997_a_atCA814228hypothetical protein LOC100242640-1e-4At3g26510octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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