Gene omics information

Query gene ID	Zm.481.1.S1_at
Gene name	mismatch binding protein Mus3
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.481.1.S1_at	AF227632.1	mismatch binding protein Mus3	-	2e-8	At4g02070	MSH6 (MUTS HOMOLOG 6)	S.X.	H.G.	Please select
0.91	99.0	Zm.4810.1.A1_at	AI745785	-	-	5e+0	At3g60390	HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3)	S.X.	H.G.	Please select
0.80	94.0	Zm.5231.1.S1_at	AW059997	-	-	2e-1	At2g44950	HUB1 (HISTONE MONO-UBIQUITINATION 1)	S.X.	H.G.	Please select
0.57	75.1	Zm.3157.4.A1_at	AI734519	-	-	5e-1	At1g09220	pentatricopeptide (PPR) repeat-containing protein	S.X.	H.G.	Please select
0.50	65.7	Zm.675.2.S1_at	AF332178.1	beta-expansin 5	-	3e-1	At4g19270	unknown protein	S.X.	H.G.	Please select
0.42	51.3	Zm.5277.1.S1_at	AI619073	-	-	1e+0	At4g39750	F-box family protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.3	99.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.3	99.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.1	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.8	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	0	3077	Zm.481.1.A1_at	AF227632.1	mismatch binding protein Mus3	-	2e-8	At4g02070	MSH6 (MUTS HOMOLOG 6)	C.G.	S.X.	Please select
0.01	2e-3	44	Zm.216.1.S1_at	AJ238787.1	MutS homolog2	-	2e-18	At3g24495	MSH7 (MUTS HOMOLOG 7)	C.G.	S.X.	Please select
0.01	1e-1	38	ZmAffx.20.1.A1_at	AI600385	-	-	3e+0	At4g02550	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	ZmAffx.20.1.S1_at	AI600385	-	-	3e+0	At4g02550	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.7103.1.S1_at	BM335919	-	-	6e-57	At4g24820	26S proteasome regulatory subunit, putative (RPN7)	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.16813.1.S1_at	AI649555	-	-	2e+0	At5g24870	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.832.1.A1_at	AY107728.1	hypothetical protein LOC100275137	-	1e+0	At1g54140	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.832.1.S1_at	AY107728.1	-	-	1e+0	At1g54140	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.3715.2.A1_a_at	AY103872.1	hypothetical protein LOC100273717 /// spliceosome RNA helicase BAT1	-	9e-152	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-8	61	Arabidopsis thaliana	At4g02070	828147	MSH6 (MUTS HOMOLOG 6)	encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	4e-1	38	Glycine max	HgAffx.19914.1.S1_at	CK349758	-	-	2e-2	At5g28640	AN3 (ANGUSTIFOLIA 3)	C.G.	S.X.	Please select
0.15	6e-41	169	Hordeum vulgare	Contig22271_at	Contig22271	-	-	9e+0	At3g55470	C2 domain-containing protein	C.G.	S.X.	Please select
0.47	0	852	Oryza sativa	Os09g0407600	9637.m02072	-	DNA mismatch repair protein MutS, C-terminaldomain containing protein	4e-17	At4g02070	MSH6 (MUTS HOMOLOG 6)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	2e-12	75	Populus trichocarpa	PtpAffx.211727.1.S1_at	pmrna22979	hypothetical protein	-	9e-49	At4g02070	MSH6 (MUTS HOMOLOG 6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	1e-77	291	Triticum aestivum	Ta.24096.1.S1_at	AJ131670.2	MSH6 protein	-	3e-2	At3g43700	ATBPM6 (BTB-POZ and MATH domain 6)	C.G.	S.X.	Please select
0.01	3e-1	36	Vitis vinifera	1612997_a_at	CA814228	hypothetical protein LOC100242640	-	1e-4	At3g26510	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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