Gene omics information

Query gene ID	Zm.4774.1.A1_at
Gene name	hypothetical protein LOC100191958
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	Zm.4774.1.A1_at	CF637265	hypothetical protein LOC100191958	-	1e+0	At3g26360	unknown protein	S.X.	H.G.	Please select
0.61	79.5	Zm.11611.1.A1_at	BM379298	hypothetical protein LOC100192942	-	5e+0	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	S.X.	H.G.	Please select
0.59	76.1	Zm.18084.1.A1_at	CD997940	-	-	8e-7	At1g16870	mitochondrial 28S ribosomal protein S29-related	S.X.	H.G.	Please select
0.57	75.1	Zm.11338.1.A1_at	BM349130	hypothetical protein LOC100274516	-	3e-6	At2g40190	glycosyl transferase family 1 protein	S.X.	H.G.	Please select
0.47	59.9	ZmAffx.732.1.A1_at	AI740043	-	-	5e+0	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	S.X.	H.G.	Please select
0.43	52.8	ZmAffx.531.1.A1_at	AI711719	-	-	8e-1	At5g20370	serine-rich protein-related	S.X.	H.G.	Please select
0.42	51.3	Zm.4196.1.A1_s_at	AI739903	hypothetical protein LOC100193143	-	1e+0	At1g22790	unknown protein	S.X.	H.G.	Please select
0.38	44.2	Zm.5070.1.A1_at	AY108736.1	hypothetical protein LOC100193023	-	2e-16	At1g22950	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	S.X.	H.G.	Please select
0.23	18.6	Zm.5230.1.A1_at	CA404914	acyl-desaturase	-	2e-17	At2g43710	SSI2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.4	96.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM253246	ZM_12h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.3	94.7	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.2	94.5	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.2	94.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM253267	ZM_4d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.1	94.3	GSM323170	Zm_SG200Dpep1_24hpi_I	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
3.0	94.0	GSM253245	ZM_12h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	2e-145	513	Zm.7051.1.S1_at	AI833408	hypothetical protein LOC100277200	-	1e+0	At5g61997	unknown protein	C.G.	S.X.	Please select
0.19	2e-40	165	Zm.18426.1.A1_at	CO529693	hypothetical protein LOC100274338	-	5e-8	At1g06890	transporter-related	C.G.	S.X.	Please select
0.05	6e-4	44	Zm.9872.1.A1_at	BQ538232	hypothetical protein LOC100277709	-	1e+0	At1g62840	unknown protein	C.G.	S.X.	Please select
0.02	2e-3	42	Zm.4191.1.A1_at	AY106954.1	hypothetical protein LOC100280227	-	3e-10	At3g13340	WD-40 repeat family protein	C.G.	S.X.	Please select
0.01	9e-3	40	Zm.13750.1.A1_at	AY105949.1	cyclin-H	-	7e-8	At5g27620	CYCH	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.579.1.S1_at	AF213455.1	Protein phosphatase type-2C	-	1e-5	At2g25070	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.5284.1.S1_at	CF017124	-	-	2e-4	At4g10590	ubiquitin carboxyl-terminal hydrolase family protein	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.19302.1.S1_at	CA400628	hypothetical protein LOC100217082	-	1e-1	At4g39790	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.18306.1.A1_at	BG266443	heavy metal-associated domain containing protein	-	1e-1	At1g76500	SOB3 (SUPPRESSOR OF PHYB-4#3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At3g26360	822240	unknown protein	F:unknown;P:unknown;C:unknown;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	PsAffx.CL1412Contig1_at	PsAffx.CL1412Contig1	-	-	3e+1	At5g52960	unknown protein	C.G.	S.X.	Please select
0.33	5e-51	200	Hordeum vulgare	Contig16536_at	Contig16536	-	-	5e+0	At3g08690	UBC11 (UBIQUITIN-CONJUGATING ENZYME 11)	C.G.	S.X.	Please select
0.37	8e-50	198	Oryza sativa	Os03g0694700	AK109166.1	-	Conserved hypothetical protein	5e+0	At4g19270	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.121254.1.A1_at	CV249707	hypothetical protein	-	6e-21	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	4e-38	159	Triticum aestivum	Ta.8157.2.S1_a_at	CA684839	-	-	3e+0	At2g05360	-	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1615986_at	CF214784	hypothetical protein LOC100265777	-	1e+0	At1g13250	GATL3 (Galacturonosyltransferase-like 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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