Gene omics information

Query gene ID	Zm.4762.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	75.1	Zm.4762.1.A1_at	BG874087	-	-	2e-6	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	S.X.	H.G.	Please select
0.71	88.2	Zm.5995.2.S1_a_at	AI666102	-	-	2e+0	At4g14385	-	S.X.	H.G.	Please select
0.71	88.2	Zm.6228.1.A1_at	AI739920	-	-	1e+0	At1g64370	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.9290.1.A1_at	AY108360.1	hypothetical protein LOC100192546	-	7e-1	At5g58260	-	S.X.	H.G.	Please select
0.67	85.8	Zm.218.1.A1_a_at	AB016802.1	ABA stimulation MAP kinase	-	6e-42	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	S.X.	H.G.	Please select
0.63	81.1	Zm.13417.1.A1_at	CA400681	hypothetical protein LOC100193979	-	4e-1	At3g05830	-	S.X.	H.G.	Please select
0.56	74.4	Zm.14792.1.A1_at	AI666236	-	-	4e+0	At3g62340	WRKY68	S.X.	H.G.	Please select
0.56	74.4	Zm.18278.1.S1_at	CK371368	-	-	1e-26	At3g52200	LTA3	S.X.	H.G.	Please select
0.50	65.7	Zm.17724.1.S1_a_at	CF623515	hypothetical protein LOC100278419	-	1e+0	At3g56240	CCH (COPPER CHAPERONE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
31.2	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.1	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.9	99.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.7	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.2	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.0	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.8	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	1e-2	40	Zm.4439.1.A1_a_at	CA404865	-	-	2e+1	Atmg01240	-	C.G.	S.X.	Please select
0.12	1e-2	40	Zm.4439.1.A1_s_at	CA404865	-	-	2e+1	Atmg01240	-	C.G.	S.X.	Please select
0.03	5e-2	38	Zm.7336.1.A1_at	AF371263.1	hypothetical protein LOC100279133 /// 50kD gamma zein	-	2e-3	At1g30460	CPSF30	C.G.	S.X.	Please select
0.03	8e-1	34	ZmAffx.949.1.S1_at	AI833412	-	-	4e-1	At3g27160	GHS1 (GLUCOSE HYPERSENSITIVE 1)	C.G.	S.X.	Please select
0.03	8e-1	34	ZmAffx.949.1.A1_at	AI833412	-	-	4e-1	At3g27160	GHS1 (GLUCOSE HYPERSENSITIVE 1)	C.G.	S.X.	Please select
0.03	8e-1	34	ZmAffx.32.1.S1_at	AI657422	-	-	3e+0	At1g12020	unknown protein	C.G.	S.X.	Please select
0.03	8e-1	34	ZmAffx.32.1.A1_s_at	AI657422	rhodopsin-like receptor	-	3e+0	At1g12020	unknown protein	C.G.	S.X.	Please select
0.03	8e-1	34	ZmAffx.180.1.A1_at	AI668329	-	-	8e-1	At1g17235	RTFL11 (ROTUNDIFOLIA LIKE 11)	C.G.	S.X.	Please select
0.03	8e-1	34	ZmAffx.180.1.S1_at	AI668329	-	-	8e-1	At1g17235	RTFL11 (ROTUNDIFOLIA LIKE 11)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-6	54	Arabidopsis thaliana	At1g25540	839141	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-1	38	Glycine max	GmaAffx.57725.1.S1_at	BM885691	-	-	2e-2	At2g45430	DNA-binding protein-related	C.G.	S.X.	Please select
0.18	5e-18	91	Hordeum vulgare	Contig13671_at	Contig13671	-	-	1e-14	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	C.G.	S.X.	Please select
0.03	9e-1	36	Oryza sativa	Os02g0138500	9630.m00372	-	Hypothetical protein	6e-5	At5g15740	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	1e-11	71	Populus trichocarpa	PtpAffx.208002.1.S1_x_at	pmrna15881	hypothetical protein	-	2e-59	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	2e-117	422	Triticum aestivum	TaAffx.58040.1.S1_at	CA622933	-	-	1e+0	At3g54770	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.03	6e-1	34	Vitis vinifera	1616819_at	CD801479	-	-	1e-2	At3g15610	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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